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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g02555 ATGAACACGGACAAGAAAGCCCGTAAAGCTTTGAAAATCGCTGTTAGTCTCCCTGGAGTTGAGTCAGCATCGTTCATTGGATCAGATAAAGACCAAATAGCAGTGACCGGGGAAGGAATTGACTCGGTCGAACTAACCACGTTGCTTAGAAAAGGTGTTGGACCCACCAAGCTAGTGAGTGTTGGTCCGGTGCAAGAGAAGAAACCTGAAGTCAAAAAACCCGCTGAGGTGCAAGTGCAGCTTAATCCTTACCCATTCTATTATTATGGCTATGACATGCCTTACTACTATTATGTATATTAG 303 44.22 MNTDKKARKALKIAVSLPGVESASFIGSDKDQIAVTGEGIDSVELTTLLRKGVGPTKLVSVGPVQEKKPEVKKPAEVQVQLNPYPFYYYGYDMPYYYYVY 100
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g02555 100 PANTHER OS04G0464100 PROTEIN 1 76 IPR044296 -
Soca5g02555 100 Gene3D - 1 67 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g02555 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr5:27964217 Soca5g02771 Soca-Chr5:30734702 dispersed
Soca Soca-Chr5:27942611 Soca5g02555 Soca-Chr5:27964217 tandem
Soca Soca-Chr5:27964217 Soca5g02556 Soca-Chr5:27964217 tandem