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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g02560 ATGGAGGCTGCTGCTACATTTTCTCTTGCCACTACTCCTTCTCAGTATTGCTCCAGCAAGAACAATGAAATGTTGTCACAGACCAGATTATGGAAAATGCCAATGTCCGTTAGATCAGTGAGAAAAGAAATCAAGGTGGTGGTGGCAGCAGCAAGATTCCCGACCGAACCTGTTACAGATAGAAGGAGTCTGATGAATTTGTTGTTATTCGGTGCTGTCGGTCTACCCGCCGCCGCCATGTTGCTCCCGTTTACCCCTCAACCCTGGTTTTTTAGGATTTCCGGAGGTGGCACCATAGCTAAGGATGAGTTTGGTGAAGATGTCACAGCATCAGAATGGCTAAAGACCAATAGACCTGGCGACAGAACCCTTACTCAAGGCTTGAAGGGAGATCCTACTTATATTATGGTGGAGAACTACGGAACTCTTGCGACATTTGGAATTAATGCGGTGTGCACCCATTTGGGGTGTATTGTGCCATGGAACACAGTAGAGAAGAAGTTTATGTGCCCCTGCCATGGCTCTCAGTACAATAAAGAGGGTAAAGTTATTAGCGGTCCTGCTCCTCTGTCTTTAGAACTGGCTCTTGTGAATATAGACGATGGCAAGGTGGTGTTTGCTCCATGGACGGAAACCCATTTCAGAACAGCTGATACTCCATGGTGGTCTTAA 672 46.73 MEAAATFSLATTPSQYCSSKNNEMLSQTRLWKMPMSVRSVRKEIKVVVAAARFPTEPVTDRRSLMNLLLFGAVGLPAAAMLLPFTPQPWFFRISGGGTIAKDEFGEDVTASEWLKTNRPGDRTLTQGLKGDPTYIMVENYGTLATFGINAVCTHLGCIVPWNTVEKKFMCPCHGSQYNKEGKVISGPAPLSLELALVNIDDGKVVFAPWTETHFRTADTPWWS 223
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g02560 223 Pfam Rieske [2Fe-2S] domain 130 190 IPR017941 GO:0051537(InterPro)
Soca5g02560 223 SUPERFAMILY ISP domain 57 222 IPR036922 GO:0051537(InterPro)
Soca5g02560 223 PRINTS Rieske 2Fe-2S subunit signature 168 180 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Soca5g02560 223 PRINTS Rieske 2Fe-2S subunit signature 147 158 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Soca5g02560 223 PRINTS Rieske 2Fe-2S subunit signature 180 192 IPR005805 GO:0016020(InterPro)|GO:0051537(InterPro)
Soca5g02560 223 Gene3D - 91 223 IPR036922 GO:0051537(InterPro)
Soca5g02560 223 CDD Rieske-cytochrome-b6f 98 223 - -
Soca5g02560 223 FunFam Cytochrome b6-f complex iron-sulfur subunit 92 223 - -
Soca5g02560 223 Gene3D Single helix bin 49 87 - -
Soca5g02560 223 ProSiteProfiles Rieske [2Fe-2S] iron-sulfur domain profile. 110 206 IPR017941 GO:0051537(InterPro)
Soca5g02560 223 PANTHER CYTOCHROME B-C1 COMPLEX SUBUNIT RIESKE, MITOCHONDRIAL 41 211 IPR014349 GO:0005886(PANTHER)|GO:0016491(PANTHER)|GO:0051537(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g02560 K02636 cytochrome b6-f complex iron-sulfur subunit [EC:7.1.1.6]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr5:28021547 Soca7g03037 Soca-Chr7:56474375 dispersed
Soca Soca-Chr5:28021547 Soca5g02561 Soca-Chr5:28021547 tandem
Soca Soca-Chr5:24664445 Soca5g02560 Soca-Chr5:28021547 wgd