AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g02598 ATGAGAGGAGTGATTGGAAAGTATCCATCAAGTGATGGAAATGGTGAAGTTGGTAATGGAAATGGGGGTGTCATAAAATACAATAGAAAATGTAGAGATATTGTGTTTCTTGTTTTTTTCATAGCTTTTTGGATCTCCATGATTGTTAACTCAAGTTTTGGGTTTAACCAAGGGAACCCATTAAGGCTTAATTTCGGGTTGGATTATAAAGGAAATGTATGTGGGGGAAAGCACAAAGATTTTGACCTTCATGAACTGGAACTTAAGTATTATGTTAATCCTAACCAAGTTTACCAAAGTGGATTAAAGAACAGCGGAGTAAAACTGGCTAACACCCGATCAATATGCTTGTTGGATTGTCCAATACCGTCAGAAGATTCTTTGAATTGGGTTTGTGATTATCCAGAGGGAGATATTCGTCTCTCTTTAGATGATTGGATCGATATGAATTATGATTATTTTGCTGACCTTACTCCTGAACTAAGAAACACTTCTCTTCAACTTCAAGGTCCTTGTTACCCTGTCATTTTTCCAAGCGTAAACGTTTATTGGACTTGCCAGTTTATCGACCGTCCATCAAATGTGTCTTTAACACATTGGAAGCAAATGAATGGGGTTAACATCAATGATGATATGGTGATAGATAAGTCTATTCACAAAGCTATCAACACACGGTCTTCAGTGTTGAAGAGATATGTGGCTGATGTTGGGAAGTCCTGGCCGGTGTTGATTGTTTGTGGAGGACTCCTGCCTCTATTTCTATCATTGCTGTGGCTTTTGATGATTCGACATTTTGTAGCTGGAATGCCATGGGTTACCGTCTTTCTCTTTAATGGCCTCATAATATCAGTCACAATGTTTTATTACTTGAAAGCTGGATGGATTGGAAATGATGCTATCTCGCCCATCATCGGTGAACATGATCCATACTATCATGTTTCTGCAAGGGAGCAACATCACATTCGTGCTGCTGCTTTCCTCATGACTTGTGTGATGATTGTTGCCGTTTTATCATCTGTAGCTATTGTTAGGCGGATTCTCATGGCAACATCAGTTCTAAAGGTTGCAGCAAAGGTCATTGGAGAAGTTCATGCTCTTATAATATTCCCGATCATACCATATCTAATCCTTGCGGTTTTTTACATGTTTTGGTTGTCTGCTGCTCTCCATCTTTTCAGTTCGGGTCAGGTAGTACGCAACGATTGCAACTCAAACTGCTGTGCTTATGATCTCAAAGCCAAACGGGTTACTTGTGATGATTGTTGTGGCTATAGCATCCATTACACTCCTCATATCACAGCTGGAATCTTATTCCACTTGTTTGGATGCTACTGGGCCACTCAATTTTTCATAGCATGTTCTTCAACCGTGATTGCTGGTTCTGTAGCTTCCTATTATTGGACGCGTGGCGAATCTTCGACAACGATTCCGTTTCTTCCTGTTTTCTCGTCGATGAAGCTACTCATGCGTTACAGCCTTGGCTCTGTGGCAATCGGTTCTTTAATTGTATCTTTTGTTGAGTCAACTCGCTTCATACTTGAGGCCATACGCCGGAGATTAAAAGTTGCGGATATTTTGCCTGAAAACTGGATTAAGAGAATGATTTTCTATACTTCTCGGTTTTGCTTGAAGGCTATTGAATTGACCATAAAATCCGTAAACCGCAATGCATACATTATGATTGCTATAACGGGAAAAGGGTTCTTTAGAGCTTCTGAAATGGCAACGGATTTGATAATCAGTAATATTCTTCGTATAGGGAAAGTGAATGTGATTGGGGATGTTATTCTGTTTCTTGGTAAGCTGTGTGTGAGTCTGGCTAGTGCTCTTTTTGCCTTTCTTATGTTGGATACTCATAAATACAAATCATCCCACAACAAGATCACATCCCCACTATTTCCTGTGCTGTTCTGTTGGGGTCTGGGATATATAGTGGCAACCCTTTTCTTTGCAGTGGTGGAAATGTCAATAGATACTATCATCCTCTCGTATTGCCAGGACGCAGAGGAACACCAAGGGACTGCACATTATGCTCCTCCACTTTTGATCGAGACTTTTGATGATCAGAACGAGGTGCAAAGAATTGCACAATGA 2094 40.31 MRGVIGKYPSSDGNGEVGNGNGGVIKYNRKCRDIVFLVFFIAFWISMIVNSSFGFNQGNPLRLNFGLDYKGNVCGGKHKDFDLHELELKYYVNPNQVYQSGLKNSGVKLANTRSICLLDCPIPSEDSLNWVCDYPEGDIRLSLDDWIDMNYDYFADLTPELRNTSLQLQGPCYPVIFPSVNVYWTCQFIDRPSNVSLTHWKQMNGVNINDDMVIDKSIHKAINTRSSVLKRYVADVGKSWPVLIVCGGLLPLFLSLLWLLMIRHFVAGMPWVTVFLFNGLIISVTMFYYLKAGWIGNDAISPIIGEHDPYYHVSAREQHHIRAAAFLMTCVMIVAVLSSVAIVRRILMATSVLKVAAKVIGEVHALIIFPIIPYLILAVFYMFWLSAALHLFSSGQVVRNDCNSNCCAYDLKAKRVTCDDCCGYSIHYTPHITAGILFHLFGCYWATQFFIACSSTVIAGSVASYYWTRGESSTTIPFLPVFSSMKLLMRYSLGSVAIGSLIVSFVESTRFILEAIRRRLKVADILPENWIKRMIFYTSRFCLKAIELTIKSVNRNAYIMIAITGKGFFRASEMATDLIISNILRIGKVNVIGDVILFLGKLCVSLASALFAFLMLDTHKYKSSHNKITSPLFPVLFCWGLGYIVATLFFAVVEMSIDTIILSYCQDAEEHQGTAHYAPPLLIETFDDQNEVQRIAQ 697
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g02598 697 Pfam Plasma-membrane choline transporter 327 669 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
Soca5g02598 697 PANTHER CHOLINE TRANSPORTER-LIKE (SLC FAMILY 44) 21 687 IPR007603 GO:0022857(InterPro)|GO:0055085(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g02598 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr5:17820551 Soca5g02598 Soca-Chr5:28314895 dispersed
Soca Soca-Chr5:28314895 Soca5g02616 Soca-Chr5:28518317 dispersed
Soca Soca-Chr5:25165253 Soca5g02598 Soca-Chr5:28314895 wgd