AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Soca5g02599 | ATGGCTGGCGTTCTCGAAACCCTAACCGTTCCTCGTACCTCCGGATTTTCGTCGGCATCCTTAACTCCGATCGCTTCTTCTCCGGTCTCTCAACTATTACTTCGCCGGCTGGAATCTAGAGGATCAAAGCTGCAGATTAATTCCTTCCGTTCTTCTTCCGGATCTGTGAAGTTGAAATCGAAGTTCGGCCGCCGTGGTGGACGTATCGTTTGTGAAGCTCAGGAAACTGCCGTACAAGTACTTCCTGTCAATGATGAAACATGGCAATCGCTTGTTTTGGAATCTGAACTTCCTGTTCTGGTCGAGTTTTGGGCTCCATGGTGTGGGCCATGTCGCATGATCCACCCTGTCATTGATGAACTAGCAAAAGAATACACAGGCAAACTCACTTGTTACAAGGTAAATACCGATGAGAGTCCTTCAATCGCAACCAAATATGGTATAAGAAGCATCCCCACTGTCATGATCTTCAAAGGTGGAGATAAGAAAGATGCAGTTATTGGTGCAGTTCCAAAACCAACTCTGTGTACCTGCATTGAGAAGTTCTTGTAG | 552 | 46.38 | MAGVLETLTVPRTSGFSSASLTPIASSPVSQLLLRRLESRGSKLQINSFRSSSGSVKLKSKFGRRGGRIVCEAQETAVQVLPVNDETWQSLVLESELPVLVEFWAPWCGPCRMIHPVIDELAKEYTGKLTCYKVNTDESPSIATKYGIRSIPTVMIFKGGDKKDAVIGAVPKPTLCTCIEKFL | 183 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Soca5g02599 | 183 | Gene3D | Glutaredoxin | 79 | 183 | - | - | |
| Soca5g02599 | 183 | SUPERFAMILY | Thioredoxin-like | 71 | 183 | IPR036249 | - | |
| Soca5g02599 | 183 | PRINTS | Thioredoxin family signature | 99 | 107 | - | - | |
| Soca5g02599 | 183 | PRINTS | Thioredoxin family signature | 107 | 116 | - | - | |
| Soca5g02599 | 183 | PRINTS | Thioredoxin family signature | 147 | 158 | - | - | |
| Soca5g02599 | 183 | CDD | TRX-family | 86 | 175 | - | - | |
| Soca5g02599 | 183 | PANTHER | GEO12009P1 | 55 | 183 | - | GO:0005737(PANTHER)|GO:0015035(PANTHER) | |
| Soca5g02599 | 183 | ProSitePatterns | Thioredoxin family active site. | 100 | 118 | IPR017937 | - | |
| Soca5g02599 | 183 | Pfam | Thioredoxin | 80 | 180 | IPR013766 | - | |
| Soca5g02599 | 183 | FunFam | Thioredoxin | 74 | 183 | - | - | |
| Soca5g02599 | 183 | ProSiteProfiles | Thioredoxin domain profile. | 38 | 183 | IPR013766 | - | |
| Soca5g02599 | 183 | NCBIfam | thioredoxin | 84 | 182 | IPR005746 | GO:0015035(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Soca5g02599 | K03671 | thioredoxin |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Soca | Soca-Chr5:28328294 | Soca5g03081 | Soca-Chr5:34441478 | dispersed | |
| Soca | Soca-Chr5:28328294 | Soca5g02604 | Soca-Chr5:28395030 | proximal | |
| Soca | Soca-Chr4:72835546 | Soca5g02599 | Soca-Chr5:28328294 | transposed | |
| Soca | Soca-Chr7:13618340 | Soca5g02599 | Soca-Chr5:28328294 | transposed | |
| Soca | Soca-Chr4:72292295 | Soca5g02599 | Soca-Chr5:28328294 | transposed | |
| Soca | Soca-Chr5:25158388 | Soca5g02599 | Soca-Chr5:28328294 | wgd |