AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g02609 ATGGCAGCTCGGTTATTAGCATATGAGGTATCCGATCTTTGCCTTGGCAAACCTGCCCTCGCCTCCCTCCCAATCTCCGCCACCATCCGCCACGCCTTAAACGCCCTCAAATCGTCCAACGACACCCACATCAGCATTTGGAGTTGTGATCACAACCACTCCACCACCAACGACCAACTCATCGATGATTGTCGTTGTGTTGGAAAAATCTGCATGGTTGATATCATTTGTTATCTTTGCAAAGATGACAACATCTCCTTTCCTTCTACTGCACTCAAATCGCCTGTTTCGGTTTTGATGTCACATGTTAACGTTCCTGCAGTCGTGAAACATGTGGAACCGTCCTTTAGTTTGCTTGAAGCTATTGATCTTATTATCAATGGAGCTCAAAATCTTGTGGTGCCAATAAAAAATAAGACCACAAAAAGAAAACAACTTCGACAATACCCAACAATCTCCCCGACCACCCATGATGGTGGTCGAGAATATTGTTGGGTCACTCAAGAGGACGTGATCAGGTTCATTCTTAGCTCAATCGTTTTATTCTCACCAACGGCGGCATACTCTATCGAGTTACTTGGCATCATCACAACAGAAATCCTCACAATCAACTACCATTCTCCTGCATCAAAAGCAGTGGATGCCATTTCAAGCTCCCTAGCTGACCAAACTTCTGTTGCGGTTGTTGATGATGATGGTGTGTTAATAGGCGAAATCTCGCCTTTCACACTCAACTATTGTGATGAACTGGTCGCAGCTGCGATCACTACATTGTCCGCTGGTGATCTTATGGCGTACATAGATTGTGGTGGCCCACCTGAAGATATAATTCGGGTGGTGGAGACTAGGTTAAAGGAAAAGAACCTGGATGGAATGCTCAATTATTTAAAGAGTATTCCATACCATAACAACAATTCATCTACAAAAGAAGATGAATTGGCATCCTCCCCGACCTTTACAGGGTCAGGGAGGTACAATGGGTCAAATAGCTACTCTGCCCGAATAATGAGGAGGGCAGAGGCTATATTCTGCTATCCAAGTAGCTCATTGGTAGCTGTGATGATTCAAGCAATAACTCATCGTTTAAGTTACGTGTGGGTGATTGAAGATGATTGTAGTTTGGTCGGAATAGTGAGATTTTCTGGCATGTTGGAAGTTTTCCGTGAACATTTAGAGAGGATGATAAACTAG 1191 43.91 MAARLLAYEVSDLCLGKPALASLPISATIRHALNALKSSNDTHISIWSCDHNHSTTNDQLIDDCRCVGKICMVDIICYLCKDDNISFPSTALKSPVSVLMSHVNVPAVVKHVEPSFSLLEAIDLIINGAQNLVVPIKNKTTKRKQLRQYPTISPTTHDGGREYCWVTQEDVIRFILSSIVLFSPTAAYSIELLGIITTEILTINYHSPASKAVDAISSSLADQTSVAVVDDDGVLIGEISPFTLNYCDELVAAAITTLSAGDLMAYIDCGGPPEDIIRVVETRLKEKNLDGMLNYLKSIPYHNNNSSTKEDELASSPTFTGSGRYNGSNSYSARIMRRAEAIFCYPSSSLVAVMIQAITHRLSYVWVIEDDCSLVGIVRFSGMLEVFREHLERMIN 396
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g02609 396 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 22 390 IPR050511 GO:0005634(PANTHER)|GO:0005737(PANTHER)
Soca5g02609 396 SUPERFAMILY CBS-domain pair 5 177 IPR046342 -
Soca5g02609 396 SUPERFAMILY CBS-domain pair 195 392 IPR046342 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g02609 - -
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr5:28431392 Soca9g03376 Soca-Chr9:41250545 dispersed
Soca Soca-Chr4:61021768 Soca5g02609 Soca-Chr5:28431392 wgd
Soca Soca-Chr5:25117529 Soca5g02609 Soca-Chr5:28431392 wgd
Soca Soca-Chr5:17870689 Soca5g02609 Soca-Chr5:28431392 wgd