Gene detail

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Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Soca5g02612	ATGAGCAAATCTCGTAACCAAAACGACGAAGCTGAAGACCAAAACGACAACGAATTTTTCTACGAATCTCTTGATCGGTTACTTTCATCTACTACTTGCTCTTCTTCTTCATCATCATCTTCTTCTGATAATGAAGATGATATTAATAATCACTGCCACGTGTTGCCGACTGGAGTCACCGGAAGCTATGACGTATGGATCTCGCAACCGTCGTCGGTGGAGGAACGGAGGTCGAGGTTGCTGCGGCAGCTTGGACTGCCGCCGGTATCGGTTTCGTCGGTTTTAGGTAAATCTATATCTGCGGATCAGTTACATATAGATGATTATGATGATGAGGAGGAGGATATACGTGTTGCGTCTGTAATCGTGCGGTCGAAATCTGCTGATCAGGAAAAACGTGGTGATTTAAATTTGAATACTACTAATTGTGAAGAAATTCTTTTAATTAATTCAGAAAGTGTAAATAATGATAATAAGGTTGATAATGTGTTGGTGAAATCGCCGAGTGTTGGTGATGGTAACGGTGTAGGTGTGTCGCCTTGTAAGCCGCCTACTGGTAAAGTTCTTAGGCGGAGTGAGGAGATTGTTAAGTGTGATGTGATTGTTGATAGGAATGGTGGTGATTCGGTTGGGATGGATTTGGATGTGGATTTGGGAAGGGATGGTGTTGAAGATGGTGATGATGCGGTGTGTACGATTAAGAATTTGGATAATGGAAAGGAGTTTGTGGTGAAGGAGGTTAGAGAGGATGGAATGTGTGGGAATTTGAAGGAAGTTGAGACAGGGAGGCATTTGACGATGGAAGAGTTTGAAATGTGTGTTGGACATTCGCCGATTGTTCAGGAGTTAATGAGACGGCAGAATGTTGAAGCTGGTAATAGTGACGATTTGGTTGATTTGAATGGGAATGGAAGTGGTGGGAGTGGATCTAAGTTGAAAAAGAAAGGGAGTTGGTTAAAGAGTATTAAGAATGTAGCTAGTTCGGTTACAGGGCATAAAGAGAGACGGAGTAGTGATGAGAGAGATACGTCGTCGGAGAAGGGTGGGAGACGGTCTAGTTCAGCTACTGATGATAGTCAAGATGCTTCTTTTCATGGTCCAGAGAGAGTTCGGGTTCGACAGTATGGGAAATCATTTAAAGATCTTACAGATTTGTATAAAATTCAAGAGATTCAGGCTCACAATGGTTCTATATGGACTATTAAGTTTAGTTTGGATGGGAAATATCTTGCGAGTGCTGGGGAAGATTGTGTCATCCATATTTGGCAAGTTGCTGGTTCAGAAAGGAAAGGCGATCTATTGTTTGATAAACAGGAAGATGGAAATTTGAATGTGTTATTGATGTCCAATGAGTCACCAGAGTCAATGTCACTACCTTCAAGTTTGGAAAGTGTACCGGAAAGGAAGAGAAGAGGAAGACTATCTATAAGCCGAAAGTCTATAAGCTTGGATCCTATTGTTGTGCCGGAGACTGCATTTGCGTTGTCAGAAAAACCCGTATGTTCCTTCAGTGGGCATCTGAATGATGTGCTTGACCTGTCCTGGTCCAAATCTCAGCATTTGCTTTCATCCTCCATGGATAAAACAGTACGGTTGTGGCAGTTGTCTAGCAAGTCATGTTTAAAGATCTTTTCTCACAGCGATTATGGTAAGAAAATAACTTAA	1665	41.98	MSKSRNQNDEAEDQNDNEFFYESLDRLLSSTTCSSSSSSSSSDNEDDINNHCHVLPTGVTGSYDVWISQPSSVEERRSRLLRQLGLPPVSVSSVLGKSISADQLHIDDYDDEEEDIRVASVIVRSKSADQEKRGDLNLNTTNCEEILLINSESVNNDNKVDNVLVKSPSVGDGNGVGVSPCKPPTGKVLRRSEEIVKCDVIVDRNGGDSVGMDLDVDLGRDGVEDGDDAVCTIKNLDNGKEFVVKEVREDGMCGNLKEVETGRHLTMEEFEMCVGHSPIVQELMRRQNVEAGNSDDLVDLNGNGSGGSGSKLKKKGSWLKSIKNVASSVTGHKERRSSDERDTSSEKGGRRSSSATDDSQDASFHGPERVRVRQYGKSFKDLTDLYKIQEIQAHNGSIWTIKFSLDGKYLASAGEDCVIHIWQVAGSERKGDLLFDKQEDGNLNVLLMSNESPESMSLPSSLESVPERKRRGRLSISRKSISLDPIVVPETAFALSEKPVCSFSGHLNDVLDLSWSKSQHLLSSSMDKTVRLWQLSSKSCLKIFSHSDYGKKIT	554

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Soca5g02612	554	MobiDBLite	consensus disorder prediction	30	53	-	-
	Soca5g02612	554	Gene3D	-	378	483	IPR015943	GO:0005515(InterPro)
	Soca5g02612	554	MobiDBLite	consensus disorder prediction	294	370	-	-
	Soca5g02612	554	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	391	424	-	-
	Soca5g02612	554	Pfam	WD domain, G-beta repeat	498	533	IPR001680	GO:0005515(InterPro)
	Soca5g02612	554	Pfam	WD domain, G-beta repeat	388	422	IPR001680	GO:0005515(InterPro)
	Soca5g02612	554	SUPERFAMILY	WD40 repeat-like	384	548	IPR036322	GO:0005515(InterPro)
	Soca5g02612	554	SMART	WD40-4	384	423	IPR001680	GO:0005515(InterPro)
	Soca5g02612	554	SMART	WD40-4	496	534	IPR001680	GO:0005515(InterPro)
	Soca5g02612	554	Gene3D	-	489	554	IPR015943	GO:0005515(InterPro)
	Soca5g02612	554	MobiDBLite	consensus disorder prediction	329	354	-	-
	Soca5g02612	554	ProSiteProfiles	Trp-Asp (WD) repeats profile.	391	424	IPR001680	GO:0005515(InterPro)
	Soca5g02612	554	MobiDBLite	consensus disorder prediction	30	45	-	-
	Soca5g02612	554	PANTHER	WD REPEAT DOMAIN 44	19	549	IPR040324	-
	Soca5g02612	554	ProSiteProfiles	Trp-Asp (WD) repeats circular profile.	503	537	-	-
	Soca5g02612	554	ProSiteProfiles	Trp-Asp (WD) repeats profile.	503	543	IPR001680	GO:0005515(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Soca5g02612	K20241	WD repeat-containing protein 44

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Soca	Soca-Chr4:61148896	Soca5g02612	Soca-Chr5:28457408	dispersed
	Soca	Soca-Chr5:25086660	Soca5g02612	Soca-Chr5:28457408	dispersed
	Soca	Soca-Chr5:28457408	Soca8g05133	Soca-Chr8:78507809	dispersed
	Soca	Soca-Chr5:25085980	Soca5g02612	Soca-Chr5:28457408	wgd