AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g02618 ATGACTACTAGTAGTAATAGTATTACGAATGGAGTATCGTTGGATTTAAGAAGTATACAGAGTTATTATGGATCACCTGCGACTCAACAGCAGCAGGTGGTACAACAGAATGGTTCGTTGCAGACTCAAAATGGATTCATCGTGCGTAAAGCGTCGAGGATGTCGTTGGCTGGATCGAGGGAGAAGGATAAGCTTCTTCCGTTTTTGTGTAGATATTTAAGTAGGAAGAAGGTTGTAATGATGGTTTTGGTTTTGTTTGCTTTGTTGGCTTTCTTGTCTGGGTTCTTTAATGCAACCAGAGAAGATGCATCAGAGAGAACGATCTTCAATCCCTTTAACGAGGCTTATAATAATACCTCTTTACAGTTCTCCAGAAGGTTTGGTAATGAGAAAGACAATCGTTCTTCCTTGCAGACATCTCTGTCCGTGTGTGAAGAAAACCCTCCCATTCGCTATTCTTCCGATGCATCCTTTTATACAGGATCCCTCCCTTCTCGTAGCAATTTTTGTCAAAATTTTGCATTTCCTCCTCCTCCTCCAGGTGACAGGAGACGGCCTGGACCTCGACCTTGTCCTGTATGTTACCTTCCAGTGGAGGAGGCTATGGCTAGCATGCCGAGCTCACCTTCAATATCACCCGTGCTTAATCACTTGACTTATTTTCATGAGGAGAGTTCTACTAAGACTGAACGACATGAAGGCTCTGATTTTGGTGGGTATCCATCTATAAAGCAAAGGAATGAATCATTTAATATTAAAGAATCAATGACTGTGCATTGTGGATTTGTAAAAGGATGCAGACCTGGTTACCAAACTGGATTTGATATCGACGTATCTGATCTTGTGGAGTTGGAACAGTATCATGACATCATTGTTGCATCAGCCATATTTGGAAACTATGATGTAATCCAACAGCCAACTAAGATTAGTGATGCTGCAAGTAGAAACATCCCATTTTATATGTTTATTGATGAAGAAACTGAAGCATATATGAGAAACTCTAGTGCTTTGGACTACAGAATGAAAGTAGGGTTGTGGAGAATTATCGTTGTACATAACATTCCTTACACCGATTCTAGACGCAATGGAAAGGTCCCGAAGCTTCTGCTACACAGGCTCTTTCCAAATGTTCGGTACTCTATATGGATTGACGGGAAGCTGCAACTCGTTGTGGACCCATATCAACTTCTGGAGAGGTTCTTGTGGCGCCACAATGCTACTTTTGCCATTTCAAAACATTATAGGCGGTTTGATGTATTTGAAGAAGCTGAAGCTAATAAGGCTGCAGGAAAATACGACAATGCGTCCATTGATTACCAGATTGATTTTTACAGAAACGAGGGTTTAACACCTTATTCTGAGGCTAAGCTTCCTATAATTAGTGATGTTCCTGAAGGGTGCGTCATCATAAGGGAACACACTCCAATAACAAATCTCTTCACCTGTTTGTGGTTCAATGAAGTTGACCGGTTTACTTCAAGAGATCAATTGAGCTTTGGTATTGTAAGGGACAAAATCATGGCTCAAGTCAACTGGAATATCAATATGTTTCTGGACTGTGAAAGACGGAACTTTGTGATACAGACATACCACCGAGATCTACTAGAGCACATGCCACCTCCTGCACCTAGAGTGAGTAATTTAAAGCGTATACGGGCTCCTATTTCTGTCCCAGTTCCTGCATCTGTACGAAGTAATCCATCTACCAAGAATGTAACAAAGAAACCTCCTGTTCGACGAAAAGGAGAGAGGAAGCCTCGGTTAAGGAGACATCCAAAAAATCCCACTAATAGGGACAACATGGTCTTTTGA 1812 41.45 MTTSSNSITNGVSLDLRSIQSYYGSPATQQQQVVQQNGSLQTQNGFIVRKASRMSLAGSREKDKLLPFLCRYLSRKKVVMMVLVLFALLAFLSGFFNATREDASERTIFNPFNEAYNNTSLQFSRRFGNEKDNRSSLQTSLSVCEENPPIRYSSDASFYTGSLPSRSNFCQNFAFPPPPPGDRRRPGPRPCPVCYLPVEEAMASMPSSPSISPVLNHLTYFHEESSTKTERHEGSDFGGYPSIKQRNESFNIKESMTVHCGFVKGCRPGYQTGFDIDVSDLVELEQYHDIIVASAIFGNYDVIQQPTKISDAASRNIPFYMFIDEETEAYMRNSSALDYRMKVGLWRIIVVHNIPYTDSRRNGKVPKLLLHRLFPNVRYSIWIDGKLQLVVDPYQLLERFLWRHNATFAISKHYRRFDVFEEAEANKAAGKYDNASIDYQIDFYRNEGLTPYSEAKLPIISDVPEGCVIIREHTPITNLFTCLWFNEVDRFTSRDQLSFGIVRDKIMAQVNWNINMFLDCERRNFVIQTYHRDLLEHMPPPAPRVSNLKRIRAPISVPVPASVRSNPSTKNVTKKPPVRRKGERKPRLRRHPKNPTNRDNMVF 603
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g02618 603 MobiDBLite consensus disorder prediction 559 603 - -
Soca5g02618 603 MobiDBLite consensus disorder prediction 574 592 - -
Soca5g02618 603 PANTHER ALKALINE CERAMIDASE-RELATED 52 562 IPR006852 -
Soca5g02618 603 Pfam TOD1-MUCI70, glycosyltransferase-like domain 218 531 IPR048354 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g02618 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr5:28524143 Soca9g03363 Soca-Chr9:41043789 dispersed
Soca Soca-Chr5:25180226 Soca5g02618 Soca-Chr5:28524143 wgd
Soca Soca-Chr5:17656673 Soca5g02618 Soca-Chr5:28524143 wgd