Gene detail

Gene Search

Species

Gene ID

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Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Soca5g02732	ATGTCTTCTTCCCTACTTTCACTCACCTCTTCATTTACTACTTCTCATTCCAAGCCAAACACTTTCAAGGCTCGAACCAATCAAACTCAAGGGTTCAGAGTCTCATGCAACGTAAAACCAACAAATGATAACAATGATAACCAACTCATACTCCCCGAAACCCAAAAACTTATCCTCCCCAACAATGTAGACCGAAGGAACCTCCTTGTGGGTCTCGGCGGTCTCTGCACCGCAGCCAACTTATCTTCCTTGTCATCGGCATTGGCTGCTCCCATTACAGCTCCTGATATCACGTCCATATGCAAGGACGCGACATCAGGTGTCAAAGTTGAAGGAGCTATAAGGACACAAAAATGTTGTCCTCCTGCCCTTGGGAAGACTGTTAAACCTTTCGTGTTTCCAAAAGAAAAAACGGTGAGAATGAGATGGCCGGCACATAAAGGGACTAAGGAGCAAGTCGAGAAGTACAAGAAAGCCATTGCAGCAATGCGGGCTCTCCCAGACGACCACCCGCACAGCTTCAAACAACAAGCTTCAATTCATTGTGCTTATTGTAACGGAGGTTACACTCAAGTCGATAGCGGGTTTCCTAATATCGATATTCAGATTCATAACTCGTGGCTCTTCTTTCCTTTCCATCGTTGGTACTTGTACTTTTACGAAAGAATCCTGGGAAAGTTAATTGACGATCCCACTTTTGCTTTACCTTACTGGAACTGGGACGATCCAGCTGGAATGGAGATTCCGAAAATGTTTCTGGGGGATGAAAGCAATCCCCTATATGACGTTTACCGTGACCCGAAACATCAACCTCCGCAATTAGTTGACTTAGCATTCAATGGGAAAGACAAGGATCCCGATATTGATCAAAAGGAGTGCAATCTTTTCACAGTGTACCATGATTTGGTTAGTAATGCGGCTGATTACATCAGTTTCTTTGGAGGTACTTATGTAGCTGGGCCTGACGTTCCAGAACCATCAGTTGGATCTGTGGAACGCGGTTGTCACACTGCGGTACATCGATGGGTAGGTAACTCGAGCCTACCTAATGGAGAGGACATGGGTAACTTCTATTCTGCGGGTTATGACCCTGTGTTTTATGTGCATCATGCTAATGTCGACCGTATGTGGAAGCTATGGAAGAATATACGCCTTCCAGGACACGTAGAACCAACCGAGGACGATTGGTTAAATGCTTCGTACGTGTTTTATGATGAGAATCAAGACCTTGTACGAGTTTATAACAAAGACTCTGTTGATATAGGGAAGCTGAGATATGATTTTGCAAAATCTGATGGTGAGCTCGCGTGGAGCAAGAGTCGACCCCCCAAACGTAACAAAAAGTCACAAGTTGCTTCAATCCCATTAGGAGATGTGAAATCGTTGGACCAGGTGAAGTTCCCCGTTAAGCTAGACAAGATCCTAAAGGTTCGTGTGAAGAGGCCAGCTGTAAACAGGACTGATGAAGAGAAGAAAAAATCTAAAGAAATTTTGTTCATCAACGGGATAAAGTACAGGGGTGATAGGTTCGTGAAATTTGATGTGTTTGTGAATGACAAGGTTAATACAGGCACGGACAAATTTCCCACGCCATGCGACCCTGAATACGCAGGTGGGTTTGCACAGGTTCCACATAGCGAGAAGAATAAAATGCTCATGTCTAGTGCAGCGAGGTTCGGGCTGGACGAGCTCTTGGAGGACACAAATACTGAAGGCGATGAGTATGCTGTGGTTGCATTGGTTCCAAGGACAGGGACTGAAGATCTCACCATCAAGGAAATCAAGATCCAGTTGGTTAACCTATTGCGTTAA	1812	44.92	MSSSLLSLTSSFTTSHSKPNTFKARTNQTQGFRVSCNVKPTNDNNDNQLILPETQKLILPNNVDRRNLLVGLGGLCTAANLSSLSSALAAPITAPDITSICKDATSGVKVEGAIRTQKCCPPALGKTVKPFVFPKEKTVRMRWPAHKGTKEQVEKYKKAIAAMRALPDDHPHSFKQQASIHCAYCNGGYTQVDSGFPNIDIQIHNSWLFFPFHRWYLYFYERILGKLIDDPTFALPYWNWDDPAGMEIPKMFLGDESNPLYDVYRDPKHQPPQLVDLAFNGKDKDPDIDQKECNLFTVYHDLVSNAADYISFFGGTYVAGPDVPEPSVGSVERGCHTAVHRWVGNSSLPNGEDMGNFYSAGYDPVFYVHHANVDRMWKLWKNIRLPGHVEPTEDDWLNASYVFYDENQDLVRVYNKDSVDIGKLRYDFAKSDGELAWSKSRPPKRNKKSQVASIPLGDVKSLDQVKFPVKLDKILKVRVKRPAVNRTDEEKKKSKEILFINGIKYRGDRFVKFDVFVNDKVNTGTDKFPTPCDPEYAGGFAQVPHSEKNKMLMSSAARFGLDELLEDTNTEGDEYAVVALVPRTGTEDLTIKEIKIQLVNLLR	603

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Soca5g02732	603	Gene3D	-	90	433	IPR008922	-
	Soca5g02732	603	MobiDBLite	consensus disorder prediction	1	26	-	-
	Soca5g02732	603	Pfam	Polyphenol oxidase middle domain	391	442	IPR022739	GO:0004097(InterPro)
	Soca5g02732	603	Pfam	Protein of unknown function (DUF-B2219)	467	598	IPR022740	GO:0004097(InterPro)
	Soca5g02732	603	Pfam	Common central domain of tyrosinase	172	382	IPR002227	GO:0016491(InterPro)
	Soca5g02732	603	PRINTS	Tyrosinase copper-binding domain signature	235	240	IPR002227	GO:0016491(InterPro)
	Soca5g02732	603	PRINTS	Tyrosinase copper-binding domain signature	204	221	IPR002227	GO:0016491(InterPro)
	Soca5g02732	603	PRINTS	Tyrosinase copper-binding domain signature	335	346	IPR002227	GO:0016491(InterPro)
	Soca5g02732	603	PRINTS	Tyrosinase copper-binding domain signature	362	380	IPR002227	GO:0016491(InterPro)
	Soca5g02732	603	PANTHER	TYROSINASE FAMILY MEMBER	64	563	IPR050316	-
	Soca5g02732	603	ProSitePatterns	Tyrosinase CuA-binding region signature.	204	221	IPR002227	GO:0016491(InterPro)
	Soca5g02732	603	SUPERFAMILY	Di-copper centre-containing domain	108	429	IPR008922	-
	Soca5g02732	603	ProSitePatterns	Tyrosinase and hemocyanins CuB-binding region signature.	363	374	IPR002227	GO:0016491(InterPro)
	Soca5g02732	603	PIRSF	PPO-plant	1	600	IPR016213	GO:0004097(InterPro)\|GO:0046148(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Soca5g02732	K00422	polyphenol oxidase [EC:1.10.3.1]

Event-related genes

Select	Gene_1	Gene_2	Event_name
	157122	Soca5g02732	Soca9g01295

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Soca	Soca-Chr5:30145819	Soca8g03464	Soca-Chr8:57746199	dispersed
	Soca	Soca-Chr5:27339262	Soca5g02732	Soca-Chr5:30145819	wgd
	Soca	Soca-Chr5:30145819	Soca9g01295	Soca-Chr9:14590513	wgd