AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g02777 ATGCATAAAACAGCGCAATCATGGTTCAGCGGAGGTCCAAGCAGCCAAACAAACAGCGATCTATCGAAACAAACACCATCACTTTTAGCTGATTGGAACGCTTATGCTGCTTCTTCTTCACAATCTGATCAGGATCTAGATTCTTCCGGTCTGGGTTTCGATATCGAATCCGCTGTTCGAACTGCTAACGATAAGGTTTCCGGCACTTTCAATGTAGTTTCACAGGGCGTGAGGGGCATACCTGGGAATTTACAGTCTGTCACGAGCAATGTACCAAGTGGACAATCTTTTGTGACTTTTGGTACACTTCTTGCTGTTGGGGTGTTCCTTGTCTTCATTGCGGTCACTGTGTTTCTACCAGTCATGGTGCTTGTGCCTCAGAAGTTTGCTATATGTTTCACTATTGGTTGTGCCCTCATAATCGCTTCATTTTTTGCTCTTAAAGGATATAGAACTCAGTTTGCTCATATGACATCTAAAGAGAGACTCCCTATTACTTTGGGATTTATTGGCAGCATGGTTGGTACCATTTATGTATCAATGGTGCTTCACAGCTATGTTCTGTCCGTGTTCTTCTCTATATTACAGGTCATCTCATTGTCATATTATGCAATTTCCTACTTTCCTGGAGGATCTGCCGGTGTTAAAATCTTCACTTCTGCCATTACGTCTTCAATTCTGAGATGCTTTGGGAGATGA 699 42.63 MHKTAQSWFSGGPSSQTNSDLSKQTPSLLADWNAYAASSSQSDQDLDSSGLGFDIESAVRTANDKVSGTFNVVSQGVRGIPGNLQSVTSNVPSGQSFVTFGTLLAVGVFLVFIAVTVFLPVMVLVPQKFAICFTIGCALIIASFFALKGYRTQFAHMTSKERLPITLGFIGSMVGTIYVSMVLHSYVLSVFFSILQVISLSYYAISYFPGGSAGVKIFTSAITSSILRCFGR 232
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g02777 232 Pfam Got1-Sft2-like family 98 209 IPR007305 GO:0016192(InterPro)
Soca5g02777 232 PANTHER UNCHARACTERIZED 1 222 IPR011691 GO:0016020(InterPro)|GO:0016192(InterPro)
Soca5g02777 232 MobiDBLite consensus disorder prediction 1 23 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g02777 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr5:30810438 Soca9g00617 Soca-Chr9:6820278 dispersed