AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g02779 ATGGGTTACCAATGTGATCATTGTGGGGAGGCACAATCAATGGTGTATTGTCGATCAGATGCAGCCTACTTGTGTTTATCGTGTGATCGTGTTGTTCATTCTGCAAATGCATTATCCAAACGCCATTCACGAACACTTATATGTGATAGGTGCAATTCACAACCCGCGTTGGTTAGATGCATAGAGGAAAAAGTATCTCTATGTCAGAATTGTGATTGGGTTGGTCATAATGATTCAACCAATGGTTCAAGCACACACAGTCGCCAAACATTAAATTGCTACTCGGGCTGCCCTTCAGCTGCAGAGCTTTCTTCTATTTGGTCATTTATGTCAGAGTCACATTTCGTTAATGATTCTGCTTGTGAGCAAGAAATGGGTTCAATGAGCATTGCTGATAATAGCCAAGGTCCCCCTAGAAGCAATAATAGTAATCAAGAGATACTTGTTACCAATGAAGAGAACGGTTTGCAAAGTGGAAAGAATACAAAAGTTTGGATGGGTTCTTCAAGTGTTCATGCAGATAATAGCTCACAAAATGTAGCTCAAGAAGTCGGACCTGTAAATTCATCTGCATCCAAGGTATCACATTCAGGGACAAAAGAACTTGAACCATTTGTTGATAATGATGGATTCTATGTTGACTTTAATATGGATGAAGTTGACTTGAGCATTGAGAATTATGAAGAACTCTTTGGTGTAGGCCATAATGATCCCGAACATCTCTTTGCTAAAGATGGGATTGACAGTTTGTTTGGTGGATCCGAATCTTCATATGCTGCCAAGGAGTCTTCAACTGGTCAGGCAAAGCCAGCATGCAGTAACGGAGCATCAGCTGACTCATTAGTGAGCTGCAAAACAGAACCAACCCGTTATGTAAGGCAACACTCAAATATATCATTTTCTAGTCTCACCGGGGAGAGCAGTGCTGGTGAATATCAAGACTGTGGAGCTTCTTCAATGCTTCTCATGGGTGAGCCACCGTGGTGCACCCAAGGCCTTGCTCCAAGCAATACACCTTCTGGCAGCAGAAGTGATGCTGTCCTTCGTTACAAGGAGAAAAAGAAGATGCGCAAGTTTGATAAGAGAGTAAGATACGCTACACGAAAGGCACGGGCTGATGTAAGAAAGCGTGTGAAAGGGCGGTTTGTGAAGGCTGGTGATGCTTATGATTATGACCCAATGAGTCAAACCCGAAGTTTCTAA 1203 42.56 MGYQCDHCGEAQSMVYCRSDAAYLCLSCDRVVHSANALSKRHSRTLICDRCNSQPALVRCIEEKVSLCQNCDWVGHNDSTNGSSTHSRQTLNCYSGCPSAAELSSIWSFMSESHFVNDSACEQEMGSMSIADNSQGPPRSNNSNQEILVTNEENGLQSGKNTKVWMGSSSVHADNSSQNVAQEVGPVNSSASKVSHSGTKELEPFVDNDGFYVDFNMDEVDLSIENYEELFGVGHNDPEHLFAKDGIDSLFGGSESSYAAKESSTGQAKPACSNGASADSLVSCKTEPTRYVRQHSNISFSSLTGESSAGEYQDCGASSMLLMGEPPWCTQGLAPSNTPSGSRSDAVLRYKEKKKMRKFDKRVRYATRKARADVRKRVKGRFVKAGDAYDYDPMSQTRSF 400
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g02779 400 Pfam CCT motif 343 385 IPR010402 GO:0005515(InterPro)
Soca5g02779 400 MobiDBLite consensus disorder prediction 168 198 - -
Soca5g02779 400 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 389 - -
Soca5g02779 400 CDD Bbox1-BBX-like 5 47 IPR049808 -
Soca5g02779 400 ProSiteProfiles Zinc finger B-box type profile. 5 47 IPR000315 GO:0008270(InterPro)
Soca5g02779 400 SMART bboxneu5 48 91 IPR000315 GO:0008270(InterPro)
Soca5g02779 400 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
Soca5g02779 400 ProSiteProfiles CCT domain profile. 343 385 IPR010402 GO:0005515(InterPro)
Soca5g02779 400 MobiDBLite consensus disorder prediction 168 197 - -
Soca5g02779 400 CDD Bbox1-BBX-like 47 91 IPR049808 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g02779 - -
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
155588 Soca2g04388 Soca5g02779
157128 Soca5g02779 Soca9g01257
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr5:30838376 Soca9g01257 Soca-Chr9:14203552 dispersed
Soca Soca-Chr4:64862531 Soca5g02779 Soca-Chr5:30838376 transposed
Soca Soca-Chr2:84079985 Soca5g02779 Soca-Chr5:30838376 wgd
leaf

Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Soca3g00464 ACH 279 331 C2C2-CO-like Transcription Factor family AT5G57660 49.057 2.61e-10 58.2
Soca3g00465 ACH 279 331 C2C2-CO-like Transcription Factor family AT5G57660 49.057 3.20e-10 57.8
Soca1g03147 . 10 352 C2C2-CO-like Transcription Factor family AT1G68190 34.545 1.27e-60 198.0
Soca7g04751 . 264 372 C2C2-CO-like Transcription Factor family AT3G07650 66.972 3.41e-42 140.0
Soca7g04753 . 236 373 C2C2-CO-like Transcription Factor family AT5G48250 57.971 2.59e-43 146.0
Soca7g04752 . 264 372 C2C2-CO-like Transcription Factor family AT3G07650 66.972 3.41e-42 140.0
Soca1g00058 ACH 334 380 C2C2-CO-like Transcription Factor family AT5G24930 53.191 1.47e-10 60.8
Soca1g00059 . 334 380 C2C2-CO-like Transcription Factor family AT5G24930 53.191 1.63e-10 60.8
Soca4g01433 . 173 327 C2C2-CO-like Transcription Factor family AT3G07650 36.709 2.71e-18 77.8
Soca4g01459 . 110 327 C2C2-CO-like Transcription Factor family AT3G07650 38.189 4.37e-36 130.0
Soca4g01458 . 110 231 C2C2-CO-like Transcription Factor family AT3G07650 41.463 9.88e-17 73.9
Soca4g01502 . 131 341 C2C2-CO-like Transcription Factor family AT3G07650 35.814 3.88e-25 102.0
Soca5g04967 ACH 236 321 C2C2-CO-like Transcription Factor family AT1G49130 34.483 6.70e-07 48.9
Soca1g05179 ACH 262 327 C2C2-CO-like Transcription Factor family AT5G15850 40.909 2.60e-09 55.5
Soca1g07111 . 34 183 C2C2-CO-like Transcription Factor family AT4G38960 56.983 1.46e-60 184.0
Soca1g07113 . 34 108 C2C2-CO-like Transcription Factor family AT4G38960 84.0 7.54e-43 135.0
Soca1g07112 . 34 183 C2C2-CO-like Transcription Factor family AT4G38960 56.983 1.46e-60 184.0
Soca1g07110 . 34 102 C2C2-CO-like Transcription Factor family AT4G38960 88.406 9.40e-42 132.0
Soca1g07109 . 34 108 C2C2-CO-like Transcription Factor family AT4G38960 84.0 7.54e-43 135.0
Soca5g02489 ACH 1 299 C2C2-CO-like Transcription Factor family AT1G78600 47.231 3.47e-77 234.0
Soca9g00689 ACH 7 354 C2C2-CO-like Transcription Factor family AT5G57660 44.986 6.12e-89 270.0
Soca4g02608 . 272 319 C2C2-CO-like Transcription Factor family AT3G02380 58.333 2.78e-13 67.8
Soca4g02565 ACH 1 331 C2C2-CO-like Transcription Factor family AT1G75540 42.571 1.88e-75 233.0
Soca1g02848 . 10 399 C2C2-CO-like Transcription Factor family AT2G33500 37.838 2.58e-87 271.0
Soca1g02846 . 10 399 C2C2-CO-like Transcription Factor family AT2G33500 38.479 6.99e-86 267.0
Soca1g02847 . 10 288 C2C2-CO-like Transcription Factor family AT2G33500 36.145 1.32e-58 194.0
Soca9g01257 ACH 1 372 C2C2-CO-like Transcription Factor family AT3G07650 55.409 8.22e-135 387.0
Soca7g02412 ACH 285 330 C2C2-CO-like Transcription Factor family AT5G57660 54.348 1.37e-10 58.5
Soca9g01210 . 1 213 C2C2-CO-like Transcription Factor family AT1G75540 51.584 2.91e-63 197.0
Soca9g01183 . 1 299 C2C2-CO-like Transcription Factor family AT1G78600 43.91 1.82e-78 238.0
Soca1g07226 ACH 1 75 C2C2-CO-like Transcription Factor family AT4G27310 61.842 1.28e-29 107.0
Soca1g07323 . 1 183 C2C2-CO-like Transcription Factor family AT4G38960 59.906 1.81e-81 239.0
Soca6g00498 . 152 328 C2C2-CO-like Transcription Factor family AT2G47890 40.845 8.24e-34 121.0
Soca2g05724 ACH 281 331 C2C2-CO-like Transcription Factor family AT5G57660 56.863 5.38e-12 64.3
Soca5g05331 . 211 319 C2C2-CO-like Transcription Factor family AT3G02380 33.028 4.93e-09 54.3
Socaptg000381l_1g00453 . 1 373 C2C2-CO-like Transcription Factor family AT5G48250 55.102 1.02e-132 382.0
Socaptg000381l_1g00384 . 1 299 C2C2-CO-like Transcription Factor family AT1G78600 47.484 1.45e-78 238.0
Soca4g01325 . 110 208 C2C2-CO-like Transcription Factor family AT3G07650 44.0 9.23e-12 59.3
Soca4g01324 . 127 210 C2C2-CO-like Transcription Factor family AT3G07650 41.176 5.18e-08 46.6
Soca2g04840 . 45 406 C2C2-CO-like Transcription Factor family AT5G24930 46.734 7.33e-94 285.0
Soca9g01165 . 1 299 C2C2-CO-like Transcription Factor family AT1G78600 41.479 3.82e-65 204.0
Soca9g01164 ACH 1 210 C2C2-CO-like Transcription Factor family AT1G78600 42.254 1.77e-47 155.0
Soca5g04660 ACH 8 259 C2C2-CO-like Transcription Factor family AT2G24790 40.146 5.10e-57 183.0
Soca5g04661 . 9 135 C2C2-CO-like Transcription Factor family AT5G57660 53.125 3.82e-43 146.0
Soca7g03107 ACH 11 347 C2C2-CO-like Transcription Factor family AT3G02380 50.0 3.40e-112 330.0
Soca5g02703 ACH 1 299 C2C2-CO-like Transcription Factor family AT1G78600 45.277 1.58e-69 215.0
Soca5g02935 . 1 204 C2C2-CO-like Transcription Factor family AT1G75540 52.941 3.51e-61 191.0
Soca5g02779 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 54.745 5.28e-134 387.0
Soca7g03971 ACH 1 326 C2C2-CO-like Transcription Factor family AT1G75540 42.286 1.19e-66 210.0
Soca8g01501 ACH 331 393 C2C2-CO-like Transcription Factor family AT5G24930 42.857 4.53e-11 62.0
Soca4g04062 ACH 3 105 C2C2-CO-like Transcription Factor family AT4G27310 53.211 1.75e-31 113.0
Soca1g06197 ACH 3 104 C2C2-CO-like Transcription Factor family AT5G54470 52.427 8.82e-30 108.0
Soca1g01652 ACH 284 329 C2C2-CO-like Transcription Factor family AT5G57660 56.522 2.48e-11 62.4
Soca4g03430 . 12 401 C2C2-CO-like Transcription Factor family AT2G33500 36.08 4.06e-75 238.0
Soca1g01477 ACH 284 329 C2C2-CO-like Transcription Factor family AT5G57660 56.522 2.44e-11 62.4
Soca6g01608 ACH 185 270 C2C2-CO-like Transcription Factor family AT2G24790 40.698 7.65e-11 59.3
Soca3g01893 ACH 12 347 C2C2-CO-like Transcription Factor family AT3G02380 50.656 1.17e-119 349.0
Soca2g04388 ACH 1 373 C2C2-CO-like Transcription Factor family AT5G48250 55.102 3.52e-132 380.0
Soca1g08475 . 3 104 C2C2-CO-like Transcription Factor family AT5G54470 52.427 9.97e-30 108.0
leaf

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Soca CCT 2.3e-15 CL0281 TF C2C2-CO-like