AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g02783 ATGATTCAGGTAAAGGCCTTACGGTTGAGGCAAGTAAGGGCCCCACTGTTGGCATTGAGTCCGGGAGCACACATGGACCCGTCACAAGATTCACGGCTCCCTGTGGGTACAATAAGACGTGAAGTTGGGAGTCAACGAAGTCGTGCTGACCAAATTCATGAGACCCCCCATGAGATCAAGTCAGCTACATCTGGTTCTGAGTTTGGAAACTCCACCTTGCTAGGCAAAGCAGCATCTTCTCATGTCCCCTTTTCCATTGCAAGGCCTTCTTCAAACTATAATAATAGGCCGCAACAAGCAATTGGGCCGCAAAAAGCTATTGGTCCAAGTTTGGAATGGAAACCGAAACCAACAAACAGTGTTCTTGCTCAAGGGACTGTCTCAAAGGAGACAATTAAGCCAGCAGGACTTCCAGTTGAGGTTTTCATTCCAACCCTGTCCGCATCAAGTAATGTTGATTCAATAGATGGTACTAGTGGACTTGAGAAGAAGCTAGAGGAGTCGCACATTTCAGACGGTCAACACGTTATTATTCCAAATCACCTTCATGTTCCCGAAGCCGAGAAACTTGGGTTTTGCTTTGGAAGTTTTGATGGCAGTTTTGGTTTAGATCTTGGCTCCTCAAATGGTCCAACGAGTGACAAGAATTCCGTGGCTTCTGAGGTGGCTGATGAAAGTATAAAGGAGCAGCCTAGAGATCAAAATGCTTCGACAACTGGTGATGAAGGAGATCTTATTGATAGTCAAACATCCTCTAGTAACGAGCCCAAAAATTTATTAGTTGATGGTGATGTAGTATTAAATGAGGACCACTGGGAGTCCAAGCAAGAGACCTCACTCCCGATTGCAGGCCATCAATACCCAGCTGTTCAGACATCTCCTAACTTCAGTTTTGGCTTCATGCCACCAGTGATTGGCAGCCACCTCACATCTTTTGAAGGCAACGAGTCTCAGGGACATGATGGTTTGCAGGTCCCTAGCTTTGTAGTTCAGCAACCATCTGACCCAGCAAGCTATTATGCTCAATTCTATCGTTCTGGTGCTGACACTGATGGTCGTATGTCACCCTTACATTCAAACGGGGTTCCAACCAAGTACAATGGAAATGTTTCGGTGTTATCTCCACAATCTTCTCAAGAGGTTGGGAACTCGCAAAGGTTGCCTGGTGCTGGTCCAACTCCGATAGGCACCCCACAACCTGGTGGGGTTATGCAAAGCTCCATAGCTCTCACTCAACAACCATTTCCCGTTTTCAGGCAGCAAGCTGGGGTTCACTTACCCCATTTCCCTCCAAATTATATCCCATATGGTTCATATTTCCCCCCATTTTATGTCCCTCCTCCATCTATCCATCAATTTATGAGTAATGGATTCCCACAACAACCTCAAGCTGGTAGTATGTATCCGACTCCACTAGTGGCTAGCCCTAAATATCCACTTCCGCAATACAAGGCTGCAAGTAATACAGGGAACACAGCTCATTTTGGAGTGCCAGGAAGCTATGGACCTTATGGCTCGACACATACGGGCTATAATACTGGTTCAGCCACTACAGCTGGCAATTTGACCACTAATGAAGACCTGGGTGGATCACAGTTCAAAAAAAATAATGTCTACATTACTGGATAG 1629 46.04 MIQVKALRLRQVRAPLLALSPGAHMDPSQDSRLPVGTIRREVGSQRSRADQIHETPHEIKSATSGSEFGNSTLLGKAASSHVPFSIARPSSNYNNRPQQAIGPQKAIGPSLEWKPKPTNSVLAQGTVSKETIKPAGLPVEVFIPTLSASSNVDSIDGTSGLEKKLEESHISDGQHVIIPNHLHVPEAEKLGFCFGSFDGSFGLDLGSSNGPTSDKNSVASEVADESIKEQPRDQNASTTGDEGDLIDSQTSSSNEPKNLLVDGDVVLNEDHWESKQETSLPIAGHQYPAVQTSPNFSFGFMPPVIGSHLTSFEGNESQGHDGLQVPSFVVQQPSDPASYYAQFYRSGADTDGRMSPLHSNGVPTKYNGNVSVLSPQSSQEVGNSQRLPGAGPTPIGTPQPGGVMQSSIALTQQPFPVFRQQAGVHLPHFPPNYIPYGSYFPPFYVPPPSIHQFMSNGFPQQPQAGSMYPTPLVASPKYPLPQYKAASNTGNTAHFGVPGSYGPYGSTHTGYNTGSATTAGNLTTNEDLGGSQFKKNNVYITG 542
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g02783 542 MobiDBLite consensus disorder prediction 232 258 - -
Soca5g02783 542 MobiDBLite consensus disorder prediction 369 404 - -
Soca5g02783 542 MobiDBLite consensus disorder prediction 43 57 - -
Soca5g02783 542 PANTHER FLOCCULATION PROTEIN (DUF1296) 26 542 IPR044277 GO:0051082(PANTHER)
Soca5g02783 542 MobiDBLite consensus disorder prediction 208 258 - -
Soca5g02783 542 MobiDBLite consensus disorder prediction 369 386 - -
Soca5g02783 542 MobiDBLite consensus disorder prediction 43 72 - -
Soca5g02783 542 MobiDBLite consensus disorder prediction 88 113 - -
Soca5g02783 542 MobiDBLite consensus disorder prediction 58 72 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g02783 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
155593 Soca2g04425 Soca5g02783
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr2:83985905 Soca5g02783 Soca-Chr5:30860055 dispersed
Soca Soca-Chr2:84564837 Soca5g02783 Soca-Chr5:30860055 dispersed
Soca Soca-Chr5:30860055 Soca5g02783 Soca-Chr5:30860055 tandem