Gene detail

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Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Soca5g02790	ATGGAGGGGTTGAGCTATGTGAGTAGGGTTCATAGTGGCTCAATAAACCCTGCTGCTGCTGGTTCTTCTTCTAGATTCAAATCTTTCAAGTCTGCATCAGTCCAAATGGACAGTCACAGAACCAGTCTTCCTTGTATTAGAGCTCAGCAGTATGGGGCAAAGGATGGGCCTTTAGTTGCTACTCCACCCAGTGATTCAGTAATTGAAGAACTCAAAAGTAAAGATTGGGAAATAGGGGTTTTAAAGGATGAATTAGCTGCAACTCAAGGGATTCGGATTAGAAGGCGACCGCCAACAGGACCTCCTTTGCATTATGTTGGACCGTTTGAGTTTCGGTTGCAGAATGAAGGGAATAGTCCTAGGAATATTTTAGAGGAAATTGTATGGAACAAGGATGTAGAGGTTACGCAGATGAAAGAGAAATATCCAATATCTTTGTTAAAGAAGGCTCTCGACAATGCACCTCCTTCCAGAGACTTTGTAGGAGCTCTTAAGGGGTCGTATTTACGAACAGGATTGTCTGGTTTAATTGCTGAAGTGAAAAAGGCTTCACCAAGTAGAGGTGTTCTAAGGGAAGATTTTCATCCTGTTGAGATAGCAAAAGCTTATGAGAAAGGCGGAGCAGCATGCCTAAGTGTTTTGACTGATTCAAAATATTTTCAGGGAAGCTTTGAGAATCTAGAGGCTATACGGAGTGCGGGAGTTAAGTGCCCTCTTTTGTGCAAAGAGTTCATTGTGGATGCATGGCAGTTGTATTATGCGCGAACGAAAGGTGCTGATGCTGTTCTGTTAATTGCAGCTGTTTTACCAGATCTTGACATCAGATATATGCTTAAGATATGCAACATGATTGGACTGACGGCCCTCGTTGAGGTCCATGATGAGAACGAAATGGATCGCATGCTAGGAATCGATGGAATTGAACTTATTGGCATCAACAATCGTAACCTTGCAACATTTGAAGTCGATATTAGTAACACAAAGAAGTTGCTTGAAGGTGAGCGTGGGGAGAAGATCAGGCAGAAAGACATAATAGTGGTCGGGGAGTCTGGGCTGTTTACTCCTGCTGACATTTCATATGTACAGGAAGCTGGTGTGAAAGCGATATTGGTCGGTGAGTCAATTGTGAAGCAGAAAGATCCGAAAAAAGGAATTAGTGAACTTTTTGGAAAAGATATATCAGCTTAG	1188	42.51	MEGLSYVSRVHSGSINPAAAGSSSRFKSFKSASVQMDSHRTSLPCIRAQQYGAKDGPLVATPPSDSVIEELKSKDWEIGVLKDELAATQGIRIRRRPPTGPPLHYVGPFEFRLQNEGNSPRNILEEIVWNKDVEVTQMKEKYPISLLKKALDNAPPSRDFVGALKGSYLRTGLSGLIAEVKKASPSRGVLREDFHPVEIAKAYEKGGAACLSVLTDSKYFQGSFENLEAIRSAGVKCPLLCKEFIVDAWQLYYARTKGADAVLLIAAVLPDLDIRYMLKICNMIGLTALVEVHDENEMDRMLGIDGIELIGINNRNLATFEVDISNTKKLLEGERGEKIRQKDIIVVGESGLFTPADISYVQEAGVKAILVGESIVKQKDPKKGISELFGKDISA	395

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Soca5g02790	395	SUPERFAMILY	Ribulose-phoshate binding barrel	131	390	IPR011060	-
	Soca5g02790	395	Gene3D	Aldolase class I	116	394	IPR013785	-
	Soca5g02790	395	Pfam	Indole-3-glycerol phosphate synthase	124	388	IPR013798	GO:0004425(InterPro)
	Soca5g02790	395	FunFam	Indole-3-glycerol phosphate synthase chloroplastic	116	394	-	-
	Soca5g02790	395	Hamap	Indole-3-glycerol phosphate synthase [trpC].	122	390	IPR013798	GO:0004425(InterPro)
	Soca5g02790	395	ProSitePatterns	Indole-3-glycerol phosphate synthase signature.	176	194	IPR001468	GO:0004425(InterPro)\|GO:0006568(InterPro)
	Soca5g02790	395	PANTHER	TRYPTOPHAN BIOSYNTHESIS PROTEIN	62	391	IPR045186	GO:0000162(PANTHER)\|GO:0004425(PANTHER)\|GO:0004425(InterPro)\|GO:0004640(PANTHER)
	Soca5g02790	395	CDD	IGPS	160	388	IPR013798	GO:0004425(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Soca5g02790	K01609	indole-3-glycerol phosphate synthase [EC:4.1.1.48]

Event-related genes

Select	Gene_1	Gene_2	Event_name
	157130	Soca5g02790	Soca9g01253

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Soca	Soca-Chr5:30941297	Soca9g01253	Soca-Chr9:14160982	dispersed