AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Soca5g02819 | ATGGCTACACCATTCAGTCCTTGTTGTTCATCTTCCACCACCACCACCACCACCTTCTCACCTTCTTCATCATCACTCAATCAAGAAGCATTTTCTTTTACAAAAATCTTGAATTTCTCAAGAAAATCATCTGCCCACAAATGGGCTCTTAAGATTCAGTCAAGATTTAATCCAAAAAACAAGTTTGAACTCAAATCCTCAAATGGGTATCCTCTTAATGCAGTTTCTTTGCAAGATGGTGCAGCAGAGAAGCCATTAGCAAAAGATTTTGTGTTGCCAGAACAAACAGGAATCAATCTGAGTGTGACCATTGTTGGTGCTTCAGGCGATCTTGCCAAGAAAAAGATATTTCCTGCACTTTTTGCTCTCTTTTATGAAGATTGTTTACCTCAGAACTTTACTATATTTGGTTATGCCCGAACCAAAATGACCGATGAGGAGCTGAGGGAAATGATTAGTAGAACGTTAACTTGCAGAATCGACAAGAGAGAGAACTGTGGGGACAAAATGGAAGAGTTTCTTCAAAGATGCTTTTACCATTCTGGTCAATACAACTCCGAGGAAAATTTTGCAGAATTGGACACTAAGCTGGAACAGAAAGAGGACGGTAAATTGTCGAATAGGTTGTTTTACTTGTCAATACCTCCAAACATTTTTGTGGACGCGGTTCGTTGTGCCAGTAGCAAAGCTTCTTCCAAAAATGGGTGGACAAGAGTAATTGTGGAAAAACCATTCGGGCGTGACTCGGAGTCGTCTGGTGAGCTAACAAGAAGCTTGAAGCAGTACTTGGCTGAGGATCAAATCTTTAGGATTGATCATTACCTGGGCAAGGAGCTAGTAGAGAATTTGTCAGTTCTTCGTTTCTCAAATCTTGTTTTTGAACCACTTTGGTCGAGAAACTACATTCGCAGTGTGCAGTTTATATTTTCTGAAGACTTTGGTACAGAAGGACGAGGAGGCTATTTTGACCACTATGGAATCATCCGTGATATAATGCAAAATCACCTTCTGCAAATATTAGCATTGTTCGCAATGGAAACACCTGTGAGTTTGGATGCTGAGGACGTTAGAAATGAAAAGGTCAAAGTCTTGAGGTCAATGAGACGCCTAGTGCTCGAGGATGTAGTCGTTGGTCAATACAAGGGTCATAGCAAGGGGGGAAAGACGTATTTAGGATACACAGATGACCCTACTGTCCCTAATGATAGTCTCACTCCAACTTTTGCAGCAGCGGCTCTCTTCATTGATAATGCCCGGTGGGATGGTGTTCCATTTCTTATGAAAGCTGGCAAGGCCCTGAATACTAAACGGGCAGAGATAAGAGTTCAATTCAGACATGTTCCAGGTAATCTATATAAAAGAAACTTTGGAACAGATATGGACAAGGCTACAAACGAGCTCGTGCTTCGTGTGCAGCCCGACGAAGCCATTTATCTCAAGATTAATAACAAGATTCCTGGTATTGGAATGAGGCTCGACCGAAGTGACCTTAATTTACTCTACAGGCTGAGGTACCCGAAGGAAATTCCTGATGCATACGAGAGGCTTTTATTGGATGCAATTGAAGGAGAAAGGAGATTGTTCATTAGAAGTGATGAGCTTGATGCTGCTTGGTCTATATTCACGCCGTTGTTGAAAGAACTCGAGGCTAAAAAGATTGCACCGGAGTTGTATCCTTATGGTAGCAGAGGACCAGTCGGAGCTCATTATCTGGCTGCAAAGTACAATGTCCGCTGGGGAGATCTTGCAGGAGATGACTGA | 1761 | 42.19 | MATPFSPCCSSSTTTTTTFSPSSSSLNQEAFSFTKILNFSRKSSAHKWALKIQSRFNPKNKFELKSSNGYPLNAVSLQDGAAEKPLAKDFVLPEQTGINLSVTIVGASGDLAKKKIFPALFALFYEDCLPQNFTIFGYARTKMTDEELREMISRTLTCRIDKRENCGDKMEEFLQRCFYHSGQYNSEENFAELDTKLEQKEDGKLSNRLFYLSIPPNIFVDAVRCASSKASSKNGWTRVIVEKPFGRDSESSGELTRSLKQYLAEDQIFRIDHYLGKELVENLSVLRFSNLVFEPLWSRNYIRSVQFIFSEDFGTEGRGGYFDHYGIIRDIMQNHLLQILALFAMETPVSLDAEDVRNEKVKVLRSMRRLVLEDVVVGQYKGHSKGGKTYLGYTDDPTVPNDSLTPTFAAAALFIDNARWDGVPFLMKAGKALNTKRAEIRVQFRHVPGNLYKRNFGTDMDKATNELVLRVQPDEAIYLKINNKIPGIGMRLDRSDLNLLYRLRYPKEIPDAYERLLLDAIEGERRLFIRSDELDAAWSIFTPLLKELEAKKIAPELYPYGSRGPVGAHYLAAKYNVRWGDLAGDD | 586 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Soca5g02819 | 586 | SUPERFAMILY | NAD(P)-binding Rossmann-fold domains | 99 | 285 | IPR036291 | - | |
| Soca5g02819 | 586 | Hamap | Glucose-6-phosphate 1-dehydrogenase [zwf]. | 99 | 581 | IPR001282 | GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro) | |
| Soca5g02819 | 586 | PANTHER | GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD | 99 | 578 | IPR001282 | GO:0004345(PANTHER)|GO:0006006(InterPro)|GO:0006006(PANTHER)|GO:0009051(PANTHER)|GO:0009570(PANTHER)|GO:0016614(InterPro)|GO:0050661(InterPro) | |
| Soca5g02819 | 586 | FunFam | Glucose-6-phosphate 1-dehydrogenase | 96 | 270 | - | - | |
| Soca5g02819 | 586 | FunFam | Glucose-6-phosphate 1-dehydrogenase | 271 | 580 | - | - | |
| Soca5g02819 | 586 | Gene3D | - | 96 | 270 | - | - | |
| Soca5g02819 | 586 | NCBIfam | glucose-6-phosphate dehydrogenase | 101 | 580 | IPR001282 | GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro) | |
| Soca5g02819 | 586 | Gene3D | Dihydrodipicolinate Reductase; domain 2 | 271 | 580 | - | - | |
| Soca5g02819 | 586 | ProSitePatterns | Glucose-6-phosphate dehydrogenase active site. | 272 | 278 | IPR019796 | GO:0004345(InterPro)|GO:0006006(InterPro) | |
| Soca5g02819 | 586 | PRINTS | Glucose-6-phosphate dehydrogenase signature | 262 | 290 | IPR001282 | GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro) | |
| Soca5g02819 | 586 | PRINTS | Glucose-6-phosphate dehydrogenase signature | 419 | 445 | IPR001282 | GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro) | |
| Soca5g02819 | 586 | PRINTS | Glucose-6-phosphate dehydrogenase signature | 314 | 331 | IPR001282 | GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro) | |
| Soca5g02819 | 586 | PRINTS | Glucose-6-phosphate dehydrogenase signature | 332 | 348 | IPR001282 | GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro) | |
| Soca5g02819 | 586 | PRINTS | Glucose-6-phosphate dehydrogenase signature | 238 | 251 | IPR001282 | GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro) | |
| Soca5g02819 | 586 | PIRSF | G6PD | 80 | 583 | IPR001282 | GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro) | |
| Soca5g02819 | 586 | SUPERFAMILY | Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain | 272 | 579 | - | - | |
| Soca5g02819 | 586 | Pfam | Glucose-6-phosphate dehydrogenase, C-terminal domain | 285 | 579 | IPR022675 | GO:0004345(InterPro)|GO:0006006(InterPro)|GO:0050661(InterPro) | |
| Soca5g02819 | 586 | Pfam | Glucose-6-phosphate dehydrogenase, NAD binding domain | 104 | 282 | IPR022674 | GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Soca5g02819 | K00036 | glucose-6-phosphate 1-dehydrogenase [EC:1.1.1.49 1.1.1.363] |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Soca | Soca-Chr5:31087368 | Soca7g04791 | Soca-Chr7:76178276 | dispersed | |
| Soca | Soca-Chr5:31087368 | Soca4g03362 | Soca-Chr4:63954555 | transposed |