Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Soca5g02830	ATGGATTTCTCAGAATCTACAAAAGTTGTATACGATAGGATTCAAAAGATAGAACCCGAAAACGTGTCCAAGATTATCGGGTATCTTCTTTTACAGGATCATGGGGAGAGGGAGATGATAAGATTAGCCTTTGGCCCTGATAATTTAATCTACTCTTTGATCAACAAGGCAAAAGCCCACCTGAAATTACCTTCTAATACGCCCGCCGCTGGTCAACCACTTTCGCCTCCTAACGTCAATTCCATCCCTGAAATGCCCATACACTTTACACCGTTCTCTCCTTCCAACCGTCATTCACCATTGACTATTCAAGTCCCGACCCGTTGTTGTGATCCCCATGGTCAACCTGTTGACTACGTTCCTATGGTTTATCCCGCTTCTTATCCTGAAGATTATCGTCTTCACAACCATCTTCGTTTCATGTCATTAGAAGATCAAGTTGAGTCTCTTAACAGCCCAGATTTTTCATCCAACAGTTACTACTCATCTGAGCCTGCATTGGGTCCTAGAGCCAATAGGAGGTCCCCAAGTTTGCCTGAATTCCCTTTCAAAGTTTGCCATTACTTTATTAAAGGGTTTTGTAGACACGGAAGCAACTGTAGGTACTTGCATCCGACCCCTGAAACCTTCTCCCAAATCTATAGCCCAAGTTTGAGTGACGATGATCACATGTTTTCACCTGGGTCTCTTGATAAACTAGAGTTGGAGCTCACTGAGCTCTTGAAATCCAGAAGAGGGTTCCCAGTGTCGATAGCTTCTTTACCAATGATATATTATGAAAAGTTCGGTAAGACACTTCAGGCTGAGGGATATTTAACTGAGAGCCAGAGACATGGCAAAGCTGGTTATAGTTTGACCAAGCTTCTGGCACGTCTTAAGAGCATTTGTCTCATTGATAGGCCTCATGGGCAACATGCAGTCGTTTTGGCTGATGACTTAGCCAAATGCATTGATCATAACGGAGATAGAAATGAACATGGTGGCATTGTAGCCGGTTCTAGGCAGATATATTTGACTTTTCCAGCTGAGAGTACCTTCTCGGAGCGTGATGTTTTCAACTATTTCAGCAAATTTGGGCCGGTCCATGACGTGAGAATTCCTTGTCAGCAAAAGAGAATGTTTGGATTTGTGACTTTTATGTTTGCGGATACCGTTAGGCATATTTTAAACAAGGGAAATCCTCATTTTGTTAGTGGTGCACGTGTTTTGGTCAAACCCTACCGCGAAAAGTGTAAGCTTGATGATAGGAAACATGGAGATACGTTTCATCATCACTGTCTTGATTCCGAATTTGGGTCGCATTCAATGCCCAAGACTTGTGATAATTCAAGGTTCATCAAGAAGCAGTTCATCGATGAACAAGAGCAGGCATTTGAATTTGAGAGGAGGCGTTTTTCAGATATGCATTTAGCAGCAGAGGTCAATAACCAATCTCAACGTTTTGGGACCTCACTCGAAGAGTTGATGCTATCAGAAGGCAATGGTCATGCACAACAAATGGACTTCCCTTCGACTGAGCGTTTTAATCATCTTCTAGATGTTTTTAACAATGGTGCAACTAGCGATGAAAAGATTAGGCAGATCAATACTAAATACAACGAGGAGGGTAGCCAGGGACTGAATCTTCCAGAGAGTCCGTTTGCATCCGCATTAGGAACTGAAATATCGACAGTTATATAG	1680	42.62	MDFSESTKVVYDRIQKIEPENVSKIIGYLLLQDHGEREMIRLAFGPDNLIYSLINKAKAHLKLPSNTPAAGQPLSPPNVNSIPEMPIHFTPFSPSNRHSPLTIQVPTRCCDPHGQPVDYVPMVYPASYPEDYRLHNHLRFMSLEDQVESLNSPDFSSNSYYSSEPALGPRANRRSPSLPEFPFKVCHYFIKGFCRHGSNCRYLHPTPETFSQIYSPSLSDDDHMFSPGSLDKLELELTELLKSRRGFPVSIASLPMIYYEKFGKTLQAEGYLTESQRHGKAGYSLTKLLARLKSICLIDRPHGQHAVVLADDLAKCIDHNGDRNEHGGIVAGSRQIYLTFPAESTFSERDVFNYFSKFGPVHDVRIPCQQKRMFGFVTFMFADTVRHILNKGNPHFVSGARVLVKPYREKCKLDDRKHGDTFHHHCLDSEFGSHSMPKTCDNSRFIKKQFIDEQEQAFEFERRRFSDMHLAAEVNNQSQRFGTSLEELMLSEGNGHAQQMDFPSTERFNHLLDVFNNGATSDEKIRQINTKYNEEGSQGLNLPESPFASALGTEISTVI	559

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Soca5g02830	559	ProSiteProfiles	OST-type HTH domain profile.	229	312	IPR025605	-
	Soca5g02830	559	FunFam	zinc finger CCCH domain-containing protein 53-like isoform X2	341	412	-	-
	Soca5g02830	559	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	334	409	IPR000504	GO:0003723(InterPro)
	Soca5g02830	559	SUPERFAMILY	RNA-binding domain, RBD	346	421	IPR035979	GO:0003676(InterPro)
	Soca5g02830	559	PANTHER	RNA-BINDING (RRM-RBD-RNP MOTIFS)	1	551	-	-
	Soca5g02830	559	SMART	rrm1-1	335	405	IPR000504	GO:0003723(InterPro)
	Soca5g02830	559	Pfam	RNA recognition motif	346	391	IPR000504	GO:0003723(InterPro)
	Soca5g02830	559	Gene3D	-	181	251	-	-
	Soca5g02830	559	MobiDBLite	consensus disorder prediction	153	173	-	-
	Soca5g02830	559	SUPERFAMILY	CCCH zinc finger	183	205	IPR036855	GO:0046872(InterPro)
	Soca5g02830	559	Gene3D	-	340	412	IPR012677	-
	Soca5g02830	559	ProSiteProfiles	Zinc finger C3H1-type profile.	180	207	IPR000571	GO:0046872(InterPro)
	Soca5g02830	559	CDD	RRM-AtC3H46-like	336	405	IPR034365	-
	Soca5g02830	559	SMART	c3hfinal6	182	206	IPR000571	GO:0046872(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Soca5g02830	-	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	155576	Soca2g04355	Soca5g02830

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Soca	Soca-Chr5:31239550	Soca8g02286	Soca-Chr8:32611658	dispersed
	Soca	Soca-Chr4:60646835	Soca5g02830	Soca-Chr5:31239550	transposed
	Soca	Soca-Chr9:15930301	Soca5g02830	Soca-Chr5:31239550	transposed
	Soca	Soca-Chr2:83585933	Soca5g02830	Soca-Chr5:31239550	wgd
	Soca	Soca-Chr2:84191722	Soca5g02830	Soca-Chr5:31239550	wgd