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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g02846 ATGTCTTTATCCATTGAAGCTGTTTCTAGCTCAACTAACATGGCTCATGAAGAAAATCATGGAGATAAAAATGAAGTTAAAGAAAATGGCGAAGAGAAAGAAACTGTAAAAAGAAGTGGGAGTGAATCTTCACTTTATGAAACTGAAGACGAGGTTGATGAAGATGTAGAGGATCAAAAAATAGAATTGGGTCCTCAATGCACCCTCAAGGAACAATTTGAAAAAGATAAGGATGATGAGAGTCTAAGAAAGTGGAAAGAACAACTACTTGGAAATGTTGACATTAATAATGTTGGAGAATCATTGGAACCGGACGTGAAGATTCTCAGCCTTTCGATTGTGTCTCCAGGAAGACCCGACATTGTTCTTGCGATACCTGAAGATGGGAAACCGAAAGGGTTATGGTTTACATTGAAAGAAGGTTGTCCTTACCGTCTTAGGTTCTCCTTTAAAGTCGGTCAGAACATTGTTGCAGGTTTCAAGTACACAAACAAAGTATGGAAAACTGGTGTCAAAGTCGATAATGTGAAACAAATGCTTGGTACTTTTAGTCCACAAGAAGAAGCATACACTTATGAGATGCCCGAGGAGACCACCCCTTCTGGTTATTTTGCAAGAGGTTCTTACTCCGCTAAAACAAAGTTTGTTGATGATGATAACAAATGCTACTTGGAGATCAGCTATTCATTTGATATCCGAAAAGATTGGGCAAATGTCGAGCAGACAAAAGCTTAG 735 38.64 MSLSIEAVSSSTNMAHEENHGDKNEVKENGEEKETVKRSGSESSLYETEDEVDEDVEDQKIELGPQCTLKEQFEKDKDDESLRKWKEQLLGNVDINNVGESLEPDVKILSLSIVSPGRPDIVLAIPEDGKPKGLWFTLKEGCPYRLRFSFKVGQNIVAGFKYTNKVWKTGVKVDNVKQMLGTFSPQEEAYTYEMPEETTPSGYFARGSYSAKTKFVDDDNKCYLEISYSFDIRKDWANVEQTKA 244
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g02846 244 MobiDBLite consensus disorder prediction 16 45 - -
Soca5g02846 244 MobiDBLite consensus disorder prediction 1 15 - -
Soca5g02846 244 Pfam RHO protein GDP dissociation inhibitor 47 235 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Soca5g02846 244 MobiDBLite consensus disorder prediction 1 64 - -
Soca5g02846 244 PRINTS RHO protein GDP dissociation inhibitor signature 189 201 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Soca5g02846 244 PRINTS RHO protein GDP dissociation inhibitor signature 215 232 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Soca5g02846 244 PRINTS RHO protein GDP dissociation inhibitor signature 173 188 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Soca5g02846 244 PRINTS RHO protein GDP dissociation inhibitor signature 156 172 IPR000406 GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0007266(InterPro)
Soca5g02846 244 PANTHER RHO GDP-DISSOCIATION INHIBITOR 37 236 IPR000406 GO:0005094(PANTHER)|GO:0005094(InterPro)|GO:0005515(InterPro)|GO:0005737(InterPro)|GO:0005829(PANTHER)|GO:0007266(PANTHER)|GO:0007266(InterPro)|GO:0016020(PANTHER)
Soca5g02846 244 SUPERFAMILY E set domains 46 237 IPR014756 -
Soca5g02846 244 FunFam Rho GDP-dissociation inhibitor 1 59 238 - -
Soca5g02846 244 Gene3D Coagulation Factor XIII, subunit A, domain 1 58 238 IPR024792 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g02846 K12462 Rho GDP-dissociation inhibitor
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Event-related genes

Select Gene_1 Gene_2 Event_name
155572 Soca2g04325 Soca5g02846
155573 Soca2g04326 Soca5g02846
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr2:83272962 Soca5g02846 Soca-Chr5:31427378 dispersed
Soca Soca-Chr2:83272962 Soca5g02846 Soca-Chr5:31427378 dispersed
Soca Soca-Chr2:89470455 Soca5g02846 Soca-Chr5:31427378 dispersed
Soca Soca-Chr4:62646966 Soca5g02846 Soca-Chr5:31427378 dispersed
Soca Soca-Chr5:10148672 Soca5g02846 Soca-Chr5:31427378 dispersed
Soca Soca-Chr1:47667526 Soca5g02846 Soca-Chr5:31427378 transposed
Soca Soca-Chr2:82328622 Soca5g02846 Soca-Chr5:31427378 wgd
Soca Soca-Chr2:83272962 Soca5g02846 Soca-Chr5:31427378 wgd