Gene detail

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Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Soca5g02863	ATGATGGGAGTGCCAAAAGAAGAGGTTGATCAAGTTCTTAAAAATGCAAAGATGGATATGAGGATAGCTGGGTTTGATGAAGAGGAGAAGCGAATTAGACAAAGGGTGTCGAATGGGTTTGATACACCATTGCAGCTTCCTCAAGGAAATTATGTTTTTGGTGCTTTTAAAACGCTTGATCTTCCAGGGATCGAGTTATATCCTCCGGCTTCAGAGGCACTGAGACTAATGCACACGCTTGCTGCAGATCCAGGAATAGTTGCTATCATGAATAAGCATAAATGGCATGTGGGAATTATGACTGAGATGGCTCCAGAGGGTTATGTTGGCGTGAGTCCTGTGTGCATTCTTGGTTTTAACAAGAATCATGGCGAGGAAATATCTTTGCGTCTTCGAACTGATGATCTCAAGGGTTTCAGAAAATATCAGAGCATTAAAAAGACTCTTTTGCATGAACTTGCCCATATGGTTTACTCTGAACATGATGCAAAATTCTTTGCTCTAGATAGTCAGCTTAACAAGGAGGCCAGTGCTCTAGACTGGACTAGATCCACGGGTCACACATTAAGTGGATCCCAGAAGACACAACAACATGGATATGAGTTTCATGCTACTGATAGTAGTATTAGAAGTAGTTTGTCTCATAAACTTGGAGGAAGCCAGTCGTCCAGTTCATTGGCAAATGCTCGAGCATCTTCAGTTGCTGCTGCTTACGAACGTTTAGTAATTGCATCCAACAATCTATCAAGAACACCCAAGTCACATAAAGAACCCGGTCCTGATGATTCTATGGATGTGACTATGTATAAGCCAGATGTCCCGGACCTGAGTGAGAAACAAACTTGTGAACCTGACCCAGATGACCATGAAGTAATTAATAGAAATGAACCCGACCCGGACCTGACCATCAATAAGCCAGATGCTATGCACATTAGCGAGAAACAAACTTATGAACCTGACCCTGATGACCATGAAGTAAGTAATAAAGTCGAGCCCAACCTGGATGCGACCATGAATAAGCCAGATGCTATGGACATTAGCGAGAAGCAAACTTATGAACCTGACCCTGATGACCATGAAGTGCTTCACAGCAAAAATGAGCCTGATCCGGATGATAGTCTGAACAGTGAAGCTATGGAATCTGAACCATGTGGCGATTTGACCCAAAACAATGTTACTTCTGATGAATTGGGTACTTTGGTTGGTGTGTCTGAAAATGAACACAAGAGGGAAATCCACGAGCCCGATCCTGATGATGGTATCTTGCATGATGATGAACTACAGAGAATTCAAGATCCTGTTATGATTGCTTGTAATCGTTTGAATAAATCCATTAAGATGCTGCAATCAGAAGTTAGTCCTTCAGAGGCTGCAGTGGTTTTCCAGACTCTCGTTAAGATTGTCAGGAATGTTATTGACCACCCCGACGAAACAAAATTCAAGAAACTTCGCAAGGCTAACCCTGTAATCCATAAGAACATAGCAAGTTACAATGCTGCAATGGAGATACTGTTTTTAATTGGTTTTTGTGAAGATGTTGTTCAAGACGAGATTGGTAGAGCAGAGGCTTATTTGGTGTTGAAGAGGAATGATCCAGGCTTGTTGTGGCTGGCCAAATCCTCTTTAGAGACATGCATTGCTTTCTAG	1647	42.2	MMGVPKEEVDQVLKNAKMDMRIAGFDEEEKRIRQRVSNGFDTPLQLPQGNYVFGAFKTLDLPGIELYPPASEALRLMHTLAADPGIVAIMNKHKWHVGIMTEMAPEGYVGVSPVCILGFNKNHGEEISLRLRTDDLKGFRKYQSIKKTLLHELAHMVYSEHDAKFFALDSQLNKEASALDWTRSTGHTLSGSQKTQQHGYEFHATDSSIRSSLSHKLGGSQSSSSLANARASSVAAAYERLVIASNNLSRTPKSHKEPGPDDSMDVTMYKPDVPDLSEKQTCEPDPDDHEVINRNEPDPDLTINKPDAMHISEKQTYEPDPDDHEVSNKVEPNLDATMNKPDAMDISEKQTYEPDPDDHEVLHSKNEPDPDDSLNSEAMESEPCGDLTQNNVTSDELGTLVGVSENEHKREIHEPDPDDGILHDDELQRIQDPVMIACNRLNKSIKMLQSEVSPSEAAVVFQTLVKIVRNVIDHPDETKFKKLRKANPVIHKNIASYNAAMEILFLIGFCEDVVQDEIGRAEAYLVLKRNDPGLLWLAKSSLETCIAF	548

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Soca5g02863	548	SUPERFAMILY	PUG domain-like	434	546	IPR036339	-
	Soca5g02863	548	SMART	PGNneu	459	528	-	-
	Soca5g02863	548	Gene3D	-	441	542	-	-
	Soca5g02863	548	ProSiteProfiles	WLM domain profile.	44	242	IPR013536	-
	Soca5g02863	548	MobiDBLite	consensus disorder prediction	248	394	-	-
	Soca5g02863	548	Pfam	PUB domain	459	533	IPR018997	-
	Soca5g02863	548	CDD	PUB-WLM	445	544	-	-
	Soca5g02863	548	MobiDBLite	consensus disorder prediction	311	330	-	-
	Soca5g02863	548	PANTHER	ZINC METALLOPROTEINASE-LIKE PROTEIN	1	547	-	-
	Soca5g02863	548	MobiDBLite	consensus disorder prediction	184	206	-	-
	Soca5g02863	548	Pfam	WLM domain	66	241	IPR013536	-
	Soca5g02863	548	MobiDBLite	consensus disorder prediction	276	303	-	-
	Soca5g02863	548	MobiDBLite	consensus disorder prediction	346	372	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Soca5g02863	K22685	DNA-dependent metalloprotease WSS1 [EC:3.4.24.-]

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Soca	Soca-Chr5:31593344	Soca5g02863	Soca-Chr5:31593344	tandem