Gene detail

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Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Soca5g02883	ATGGATTTTGAGTTGAGAAGGGCTCGAGAGAAATTGGAGAAAGAACAAAAAGATAGAAAAGAAATAGCAAAAAAAAGGATTGAAAAAGAAAAGAAAGCAAAACAAGAAGCTGCGAGTCAACGTGAAGCCATTGAAGCTGCTCAACGATCTCGCAGAATCCATGCCATTGAATCCCAGCTTAAGGCAGATCAGCAGATGGAAGAAAATATATTTGCTGGGAGAGGAATTTCTTTTAACCGTGTGCTAGAAGCTGTACCATTCGAGGGTTCCGGAGATAAGATCAAACTGCCAGCCTCCTGCTTCAATGATTTATCTGGTGAAGGTGCTTTTGAAAAAGGTCCCCTTCATTTTCAGCTGTCGGTAGTTCAGCAAAATAAGTCATCACAGTCACGATCAATACCCGCTGAAAGTATAGACTGGGGATCAACCCATGCAGGGGTGTTGGAATTCACCGCAGAAGAAGGTTCTGTTGGGATCCCTCCTCACATTTGGAATAACTTATACTCCAAACATGATCCGATGACTCCTTTAGTTGAAGTAAAGTATGTGTGGCTAGCAAAAGGGACATATGCAAAGCTTCAATCAGAAGAACTTGGGTTCTCGGATATACCCAACCATAAAGCTGTCCTTGAAACAACTCTCCGCCAGCATGCAACCCTTTCTCAAGATGATGTTTTGACTGTCAAACACGGTGTATTGACTTATCATCTGCGTGTGCTTGAGCTAAAACCGTCATCAAGTGTGTCTGTCCTTGAAACAGATATTGAAGTCGACATCATTGGTCCCGATTCACTTCCTGAGAAAAGCAATCAGCATGTGCTAAAGCCACTAACTTTTGGGAAATCTGAATCTGGTGTTATCAATGAAGGAGAATACACTTATTACAAATTTTCAATAGATGATGACATGTGGAGTAGAGTTACATCTGGGGATGCTGAAGTTGAAGTAAAGTTGGATTCAGAGGCAAAAGATGGAGATACCGATCTTTATCTTTCACAACACCCTCTGTTATTCCCAAATACGCACCAACATGGTTGGTCTAGCCATGACATGGGTTCTAAGTGCTTGGTTCTCGGCTCAAAAGACCACAGCTTAGGTGCAGGTACTTATAGCGTTGGTGTGTATGGCTTCAAAGGGACCACAAAATACAATCTCTTGGTAACCATTCAAGATACTTCCAACACAAAGGCCGGCCAACAACCTGCGGTGTCTTCTACACATGTGTCAACAGCAGATACAGTAGAGTGCAGCAATTGCAAACATTACATACCGTTAAGAACAATAGCACTTCATGAGGCCTATTGCAGAAGACATAATGTTATCTGTCAACATGCTGATTGTGGTGTTGTCCTTCGGACTGAAGAGGTCAAGAACCATGTGCATTGTGAGAAATGTGGACTAGCTTTTCATAGTGGAGAGGTAGAAAAACACATGAAAGTGTTTCATGAGCCGCTATGTTGTGGGTGTGGGGTCATCCTTGAGAAGACAGAAATGGTGCAACACCAGTCCTCAGAGTGCGCCTTACGTCTTGTGACATGTCGATTTTGTGGGGACATGGTCCAAGCTGGTTCTGTAGCCGCTGATACACGAGATCGGTTGAGAGGACTTTCCGAGCATGAGAGTCTTTGTGGGTCAAGAACTGCCCCATGTGACTCCTGTGGTCGGTCTGTCATGTTGAAAGAAATGGAAATTCATCAGGTAGCTGTTCATCAGAAGAATTGA	1722	43.32	MDFELRRAREKLEKEQKDRKEIAKKRIEKEKKAKQEAASQREAIEAAQRSRRIHAIESQLKADQQMEENIFAGRGISFNRVLEAVPFEGSGDKIKLPASCFNDLSGEGAFEKGPLHFQLSVVQQNKSSQSRSIPAESIDWGSTHAGVLEFTAEEGSVGIPPHIWNNLYSKHDPMTPLVEVKYVWLAKGTYAKLQSEELGFSDIPNHKAVLETTLRQHATLSQDDVLTVKHGVLTYHLRVLELKPSSSVSVLETDIEVDIIGPDSLPEKSNQHVLKPLTFGKSESGVINEGEYTYYKFSIDDDMWSRVTSGDAEVEVKLDSEAKDGDTDLYLSQHPLLFPNTHQHGWSSHDMGSKCLVLGSKDHSLGAGTYSVGVYGFKGTTKYNLLVTIQDTSNTKAGQQPAVSSTHVSTADTVECSNCKHYIPLRTIALHEAYCRRHNVICQHADCGVVLRTEEVKNHVHCEKCGLAFHSGEVEKHMKVFHEPLCCGCGVILEKTEMVQHQSSECALRLVTCRFCGDMVQAGSVAADTRDRLRGLSEHESLCGSRTAPCDSCGRSVMLKEMEIHQVAVHQKN	573

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Soca5g02883	573	Gene3D	-	76	185	IPR042299	-
	Soca5g02883	573	Pfam	TRAFD1-XAF1, zinc finger	536	565	IPR049439	-
	Soca5g02883	573	MobiDBLite	consensus disorder prediction	1	20	-	-
	Soca5g02883	573	Pfam	Ubiquitin fusion degradation protein UFD1	90	262	IPR004854	GO:0006511(InterPro)
	Soca5g02883	573	Gene3D	Zinc-RING finger domain, C3HC4 (zinc finger)	480	531	IPR013083	-
	Soca5g02883	573	Coils	Coil	5	50	-	-
	Soca5g02883	573	Gene3D	-	187	260	-	-
	Soca5g02883	573	Gene3D	-	281	395	-	-
	Soca5g02883	573	PANTHER	UBIQUITIN FUSION DEGRADATON PROTEIN 1	1	545	IPR004854	GO:0006511(InterPro)\|GO:0030433(PANTHER)\|GO:0031593(PANTHER)\|GO:0034098(PANTHER)\|GO:0071712(PANTHER)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Soca5g02883	K14016	ubiquitin fusion degradation protein 1

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Soca	Soca-Chr5:31932823	Soca1g07326	Soca-Chr1:113211411	transposed