Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Soca5g02901	ATGGGCTCTTTAATCAAAGCGAGCTTGCTCTTGTTTGTCTCCTTTTTTCTTTTGGCACCTATTGCATATTCAGCTGGTAATGGTAGATTGGTTAGAGTTGGACTTAAGAAGAGGAAAATCAACCAACTTGGTGGATATGGTGGCTCTTATTTTGGGAAGGCTAGAAGTTATCATGGTGTTCGTGCTGATAAGAGGGGTTCAGCTAGTGACACTATTCCTCTAGAAAACTACATGGATGCTCAGTATTATGGTGAGATTGGTATCGGCACTCCACCTCAAAAGTTCACTGTGATTTTCGACACTGGAAGTTCCAACCTGTGGGTGCCTTCTTCAAAGTGTCTTTTCTCGGCAGCTTGCCTTTTCCACTCAAAGTATAAGTCTAGTCAATCAAGTTCCTACAAGAAAGACGGGAAATCTGCTGCAATTCATTATGGAAGTGGCTCTATCACTGGTTTCTTTAGTCAAGATTCTATCCAACTTGGTACTCTTGTTGTTAAAGAACAGGATTTTATAGAGGCAACCAAAGAGCCTGGCCTCACATTCTTGGCAGCCAAGTTTGATGGTATACTTGGCCTTGGGTTTCGAGAGATATCCGTTGGGGATGCTGTTCCTGTTTGGTACAACATGGTTGTACAAAATCTCGTTCAAGAACCTGTATTTTCATTTTGGCTTAATCGCCAAGTTAATGAGGGCGAAGGAGGCGAACTTGTGTTTGGTGGGGTCGATACTCATCATTTCAAGGGTGAGCACACATATGTTCCAGTGAGTCGAAAAGGCTATTGGCAGTTCGAAATGGGTGATGTCCTGATTGGTGATAATTCAACTGGATTTTGCATCAGTGGTTGTTCTGCAATTGCTGATTCTGGAACCTCTTTGTTGGCTGGCCCAACGGTGGTTATCACTGAAATTAATCAAGCCATTGGCGCTTCAGGGTTTATGAGCGAACAATGCAAGACATTTGTTGACGAGTATGGGAAAACTATTATTGATATGTTGTTAACTGAGACACAGCCAGAAAAAATCTGTTCTCAGATGATGTTATGCTCCTCTATGAATGGTTCAGCTGATATCAACATGATAATTGAGAATGTGGTTGACGAGAATAATGGAAGATCATCTGGTGTAGATGATGACGAGATGTGTAATTTCTGTCAGATGGCGGTTGTTTGGATGGAAAATCAGATCAGGCGAAACGTGACTGAAGAACAAATAATTAACTATGTTGATAAGCTGTGTGAGCGATTGCCAAGTCCAATGGGAGCATCTGGAGTTGACTGTAATACTCTTTCCTCCTTGCCCAACATTGCATTTACAATTGGTGGTAAAGTTTTCGACTTCTCCCCTGCAGAGTATATTCTGAAAGTTGGTGAGGGGGCAGCAGCAAAATGCATCAGTGGATTTACTTCTTTTGATATGGCACCTCCTCGTGGACCTCTATGGATCCTGGGAGATATATTTATGGGTAAATACCATACGGTGTTTGACTATGGTAACTTACAAGTTGGGTTTGCAGAAGCAGCTTGA	1524	42.13	MGSLIKASLLLFVSFFLLAPIAYSAGNGRLVRVGLKKRKINQLGGYGGSYFGKARSYHGVRADKRGSASDTIPLENYMDAQYYGEIGIGTPPQKFTVIFDTGSSNLWVPSSKCLFSAACLFHSKYKSSQSSSYKKDGKSAAIHYGSGSITGFFSQDSIQLGTLVVKEQDFIEATKEPGLTFLAAKFDGILGLGFREISVGDAVPVWYNMVVQNLVQEPVFSFWLNRQVNEGEGGELVFGGVDTHHFKGEHTYVPVSRKGYWQFEMGDVLIGDNSTGFCISGCSAIADSGTSLLAGPTVVITEINQAIGASGFMSEQCKTFVDEYGKTIIDMLLTETQPEKICSQMMLCSSMNGSADINMIIENVVDENNGRSSGVDDDEMCNFCQMAVVWMENQIRRNVTEEQIINYVDKLCERLPSPMGASGVDCNTLSSLPNIAFTIGGKVFDFSPAEYILKVGEGAAAKCISGFTSFDMAPPRGPLWILGDIFMGKYHTVFDYGNLQVGFAEAA	507

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Soca5g02901	507	Pfam	Saposin-like type B, region 1	380	416	IPR007856	GO:0006629(InterPro)
	Soca5g02901	507	SUPERFAMILY	Saposin	313	416	IPR011001	-
	Soca5g02901	507	FunFam	Lysosomal aspartic protease	66	310	-	-
	Soca5g02901	507	SUPERFAMILY	Acid proteases	10	506	IPR021109	-
	Soca5g02901	507	ProSitePatterns	Eukaryotic and viral aspartyl proteases active site.	284	295	IPR001969	GO:0004190(InterPro)\|GO:0006508(InterPro)
	Soca5g02901	507	ProSiteProfiles	Saposin B type domain profile.	377	418	IPR008139	-
	Soca5g02901	507	Pfam	Eukaryotic aspartyl protease	81	506	IPR033121	-
	Soca5g02901	507	ProSitePatterns	Eukaryotic and viral aspartyl proteases active site.	97	108	IPR001969	GO:0004190(InterPro)\|GO:0006508(InterPro)
	Soca5g02901	507	Gene3D	Acid Proteases	31	240	IPR021109	-
	Soca5g02901	507	Gene3D	-	312	416	-	-
	Soca5g02901	507	PRINTS	Pepsin (A1) aspartic protease family signature	88	108	IPR001461	GO:0004190(InterPro)\|GO:0006508(InterPro)
	Soca5g02901	507	PRINTS	Pepsin (A1) aspartic protease family signature	480	495	IPR001461	GO:0004190(InterPro)\|GO:0006508(InterPro)
	Soca5g02901	507	PRINTS	Pepsin (A1) aspartic protease family signature	284	295	IPR001461	GO:0004190(InterPro)\|GO:0006508(InterPro)
	Soca5g02901	507	PRINTS	Pepsin (A1) aspartic protease family signature	234	247	IPR001461	GO:0004190(InterPro)\|GO:0006508(InterPro)
	Soca5g02901	507	PANTHER	BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED	26	506	IPR001461	GO:0004190(PANTHER)\|GO:0004190(InterPro)\|GO:0006508(PANTHER)\|GO:0006508(InterPro)
	Soca5g02901	507	Gene3D	Acid Proteases	241	507	IPR021109	-
	Soca5g02901	507	ProSiteProfiles	Saposin B type domain profile.	312	352	IPR008139	-
	Soca5g02901	507	ProSiteProfiles	Peptidase family A1 domain profile.	82	504	IPR033121	-
	Soca5g02901	507	Pfam	Saposin-like type B, region 2	316	348	IPR008138	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Soca5g02901	K08245	phytepsin [EC:3.4.23.40]

Event-related genes

Select	Gene_1	Gene_2	Event_name
	155554	Soca2g04196	Soca5g02901

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Soca	Soca-Chr5:32291777	Soca8g03217	Soca-Chr8:53966349	dispersed
	Soca	Soca-Chr2:81572431	Soca5g02901	Soca-Chr5:32291777	wgd