AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g02916 ATGCATATAACAGGACCTCATTCTTCATCTATTCTCCGGCGAGCTTCTAGGCCTTCCGCCACCAGGCTTCAATCTTCTATTTCCACTAAATCACCTGCATCGGCATCGGCGTCTTCACCGTCACCATCTGCGGCGCAGCTCCGACCTCACACAACCGCATCCGCCGCCTTCCGATCTCGATGGAGCCACGGCGTCGATTGGAAGTCTCCGGCGTCTCTCTCTTCTCAGATCAGAACTACTGCTTCTCCTGTTTTGGATCGATTTCACCGCACTCTATCTACTCTCGCTTCTGAGAATGCTTTCAGCGGTATTTTGACTGGTCTCCCCAAGCCTGGAGGTGGAGAGTTTGGAAAGTTCTATAGTTTGCCTGCTTTGAATGATCCAAGAGTCGACAAGCTACCATATTCGATTAGGATACTTCTCGAATCTGCAATCCGTAATTGTGACAATTTCCAAGTCACGAAGGAAGATGTCGAGAAAATCATTGATTGGGAGAAGACTGCTCCAAAGCAAGTTGAAATTCCATTCAAGCCGGCTCGTGTTCTGTTGCAGGATTTTACTGGCGTCCCAGCTGTGGTTGACCTTGCATGTATGCGTGATGCCATGAACAATCTTGGAGGGGATTCTAATAAAATTAATCCTTTGGTTCCTGTGGATCTTGTGGTCGATCATTCAGTTCAAGTTGATGTTGCTAGGTCTGAGAATGCAGTACAAGCAAATATGGAACTTGAATTTCAGAGAAATAAGGAGAGATTTGCTTTTCTTAAGTGGGGATCCAAAGCTTTCCAAAACATGCTTGTGGTGCCACCTGGATCTGGTATTGTGCATCAGGTTAACCTTGAATATCTTGGACGAGTTGTTTTCAACACTGATGGGATGCTATATCCTGATAGTGTTGTTGGAACCGATTCCCACACTACAATGATTGATGGGTTAGGTGTTGCTGGTTGGGGAGTTGGAGGAATTGAAGCAGAAGCGGCGATGCTTGGGCAGCCAATGAGTATGGTTTTGCCTGGTGTTGTTGGTTTCAAGTTATCAGGGAAACTGCGCAATGGTGTGACAGCCACTGATTTGGTTTTGACCGTCACCCAAATGTTGAGGAAGCATGGTGTTGTGGGCAAATTTGTTGAATTCCATGGGGATGGTGTGGGTAAAATTTCACTTGCTGACCGGGCTACTATAGCTAACATGTCTCCAGAGTACGGTGCAACTATGGGTTTCTTCCCGGTGGATCATGTTACTCTTCAATATTTGAAGTTAACTGGACGGAGTGATGATACAGTTGCCATGATAGAAGCATACTTGCGTGCAAACAATATGTTTGTTGACTATAATGAGCCACAAGAAGAAAGAGTGTACTCATCTTATTTGGCGCTTGATCTTTCAGAAGTAGAACCTTGTATTTCAGGGCCAAAAAGGCCTCATGATCGAGTCCCTTTGAAGGACATGAAAGCAGATTGGCATTCTTGCCTTGATAATCAAGTGGGATTCAAGGGATTTGCGGTACCAAAAGAGGCACAAGAAAAAGCTGTAAAGTTTGATTTTCACGGACAGCCAGCAGAACTTAGGCATGGCAGTGTTGTGATTGCTGCTATCACAAGCTGCACAAATACATCAAATCCTAGTGTTATGCTTGGGGCGGGGCTTGTTGCAAAAAAGGCCTGTGAATTGGGCCTACAGGTCAAACCATGGGTTAAAACAAGTCTTGCTCCTGGTTCTGGAGTTGTTACGAAGTATTTGCTAAAAAGTGGGTTACAGAAGTATTTGAATGAGCAAGGGTTTAACATCGTTGGATATGGCTGTACCACATGTATTGGTAATTCAGGGGACTTGGATGAAGCAGTTGCTACTGCTATATCAGATAATGATGTCATTGCATCAGCAGTTCTCTCCGGGAATCGAAACTTTGAGGGGCGTGTTCATGCTTTGACACGGGCAAACTATCTTGCATCACCTCCTTTGGTTGTTGCCTATGCCCTTGCTGGCACGGTTGATATTGATTTTGAGAAGGAACCGATCGGAGTTGGAAAAGATGGCAAGGATGTTTATTTCAGGGACATATGGCCAAGTACCGAAGAAATTGCTGATGCTGTTCAATCAAGTGTTCTGCCTGAAATGTTTAAGAGTACATATAAATCCATCACCGAGGGAAATCCCATGTGGAATGACCTATCAGTCCCTGAAGCCAAGCTATATACATGGGATCCAAATTCTACCTACATTCACGAGCCACCATATTTCAAGAACATGACAATGGATCCCCCTGGGCCCCATGGCGTGAAGGATGCTTACTGCTTGCTGAACTTTGGTGACAGTATCACAACAGATCACATTTCTCCCGCAGGAAGCATCCACAAGGAAAGCCCAGCGGCAAAGTTTCTTCTTGAACGCGGTGTTGACCGCAAGGATTTCAACTCGTATGGCAGTCGACGTGGTAATGATGAGATTATGGCCAGGGGCACTTTTGCCAATATTCGCATTGTGAACAAGCTCTTAAATGGGGAAGTTGGCCCAAAGACTCTACATATTCCCACTGGAGAGAAACTCTCAGTTTTTGATGCAGCATCAAAATACAAGGCTGCTGGTCAGGATACAATTGTGTTGGCTGGAGCAGAGTATGGAAGTGGAAGCTCAAGGGATTGGGCTGCCAAGGGTCCCATGTTATTGGGGGTTAAAGCAGTAATTGCAAAGAGCTTTGAGAGGATCCATAGAAGTAACTTGGTGGGAATGGGTATAATACCACTTTGCTTCAAAGCCGGTGAGGATGCAGATACTTTACAATTGACTGGTCATGAACGATATACCATTGACCTACCAAATAACATTAGTGAGATCCGACCTGGTCAAGATGTCACTGTCACAACTGACACCGGAAAGTCATTCACGTGTACCGCCCGCTTTGACACTGAGGTGGAGTTGGAGTATTTCAATCATGGTGGCATCCTTCCATATGTTATCCGTCAACTATCGGCACAAAAATGA 2982 45.31 MHITGPHSSSILRRASRPSATRLQSSISTKSPASASASSPSPSAAQLRPHTTASAAFRSRWSHGVDWKSPASLSSQIRTTASPVLDRFHRTLSTLASENAFSGILTGLPKPGGGEFGKFYSLPALNDPRVDKLPYSIRILLESAIRNCDNFQVTKEDVEKIIDWEKTAPKQVEIPFKPARVLLQDFTGVPAVVDLACMRDAMNNLGGDSNKINPLVPVDLVVDHSVQVDVARSENAVQANMELEFQRNKERFAFLKWGSKAFQNMLVVPPGSGIVHQVNLEYLGRVVFNTDGMLYPDSVVGTDSHTTMIDGLGVAGWGVGGIEAEAAMLGQPMSMVLPGVVGFKLSGKLRNGVTATDLVLTVTQMLRKHGVVGKFVEFHGDGVGKISLADRATIANMSPEYGATMGFFPVDHVTLQYLKLTGRSDDTVAMIEAYLRANNMFVDYNEPQEERVYSSYLALDLSEVEPCISGPKRPHDRVPLKDMKADWHSCLDNQVGFKGFAVPKEAQEKAVKFDFHGQPAELRHGSVVIAAITSCTNTSNPSVMLGAGLVAKKACELGLQVKPWVKTSLAPGSGVVTKYLLKSGLQKYLNEQGFNIVGYGCTTCIGNSGDLDEAVATAISDNDVIASAVLSGNRNFEGRVHALTRANYLASPPLVVAYALAGTVDIDFEKEPIGVGKDGKDVYFRDIWPSTEEIADAVQSSVLPEMFKSTYKSITEGNPMWNDLSVPEAKLYTWDPNSTYIHEPPYFKNMTMDPPGPHGVKDAYCLLNFGDSITTDHISPAGSIHKESPAAKFLLERGVDRKDFNSYGSRRGNDEIMARGTFANIRIVNKLLNGEVGPKTLHIPTGEKLSVFDAASKYKAAGQDTIVLAGAEYGSGSSRDWAAKGPMLLGVKAVIAKSFERIHRSNLVGMGIIPLCFKAGEDADTLQLTGHERYTIDLPNNISEIRPGQDVTVTTDTGKSFTCTARFDTEVELEYFNHGGILPYVIRQLSAQK 993
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g02916 993 CDD AcnA-IRP-Swivel 768 938 IPR044137 -
Soca5g02916 993 Gene3D - 691 752 - -
Soca5g02916 993 Gene3D Aconitase, domain 3 100 466 IPR015931 -
Soca5g02916 993 FunFam cytoplasmic aconitate hydratase 467 690 - -
Soca5g02916 993 SUPERFAMILY LeuD-IlvD-like 731 988 - -
Soca5g02916 993 SUPERFAMILY Aconitase iron-sulfur domain 113 727 IPR036008 -
Soca5g02916 993 NCBIfam aconitate hydratase AcnA 117 989 IPR006249 -
Soca5g02916 993 Pfam Aconitase C-terminal domain 791 919 IPR000573 -
Soca5g02916 993 Gene3D Aconitase, domain 3 467 690 IPR015931 -
Soca5g02916 993 PANTHER ACONITASE-IRON-RESPONSIVE ELEMENT FAMILY MEMBER 97 990 IPR006249 GO:0003994(PANTHER)|GO:0005739(PANTHER)|GO:0005829(PANTHER)|GO:0006099(PANTHER)|GO:0006101(PANTHER)|GO:0030350(PANTHER)|GO:0051539(PANTHER)
Soca5g02916 993 Pfam Aconitase family (aconitate hydratase) 159 662 IPR001030 -
Soca5g02916 993 MobiDBLite consensus disorder prediction 1 52 - -
Soca5g02916 993 Gene3D Aconitase, domain 4 755 991 IPR015928 -
Soca5g02916 993 ProSitePatterns Aconitase family signature 1. 527 543 IPR018136 -
Soca5g02916 993 PRINTS Aconitase family signature 593 606 IPR001030 -
Soca5g02916 993 PRINTS Aconitase family signature 384 397 IPR001030 -
Soca5g02916 993 PRINTS Aconitase family signature 265 273 IPR001030 -
Soca5g02916 993 PRINTS Aconitase family signature 308 323 IPR001030 -
Soca5g02916 993 PRINTS Aconitase family signature 466 480 IPR001030 -
Soca5g02916 993 PRINTS Aconitase family signature 531 542 IPR001030 -
Soca5g02916 993 PRINTS Aconitase family signature 294 307 IPR001030 -
Soca5g02916 993 PRINTS Aconitase family signature 370 383 IPR001030 -
Soca5g02916 993 PRINTS Aconitase family signature 241 254 IPR001030 -
Soca5g02916 993 ProSitePatterns Aconitase family signature 2. 593 606 IPR018136 -
Soca5g02916 993 FunFam Aconitate hydratase 99 466 - -
Soca5g02916 993 FunFam Aconitate hydratase 755 991 - -
Soca5g02916 993 CDD AcnA-IRP 180 664 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g02916 K01681 aconitate hydratase [EC:4.2.1.3]
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Event-related genes

Select Gene_1 Gene_2 Event_name
155552 Soca2g04182 Soca5g02916
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr5:32518474 Soca8g05071 Soca-Chr8:77931025 dispersed
Soca Soca-Chr2:88812869 Soca5g02916 Soca-Chr5:32518474 transposed
Soca Soca-Chr2:81320816 Soca5g02916 Soca-Chr5:32518474 wgd