Gene detail

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Gene ID

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Soca5g02945	ATGAATAACAAGTTAATGATGCTGCTCATTAATTTCACATTGTCTTTATTCTTGGTTTCCCATGTCATGGTCGGAGCAAGCGCCAACGAAGATATCCTCATCCGTCAAGTGACAGGAGGAGACGAAGCAGACCATCGTCACAGGAACAACTTTAACGTCTTCAAAAGGCAGTTTAACAAATTTTACGCGTCACTAGAAGAAGATGAGTACAGGTTTTCTGTTTTCAAAGCTAACTGGAATCGCGCAATGCGTCATCAAAAACTTGACCCGTCTGCTATGCATGGGATCACTCAGTTTTCTGATATGACGTCTACGGAGTTTAAGAAGCATCTGGGGTTGACGTCGCGACGTCTTAGGTTCCCTGCTGATGCGGGCAAGGCTCCGATCTTGCCCACGGATGATTTACCGGGTGATTTTGATTGGAGAGATCATGGTGCTGTTACTGAGGTCAAGAATCAGGCTTCATGCGGGTCATGCTGGTCGTTTAGTACAACTGGGGCGTTAGAAGGTGCACATTTCCTTGCTACGGGGAACCTTGAAAGCCTTAGCGAGCAGCAACTTGTTGATTGTGATCATGAGTGTGATCCAGAAGTACAAGGATCATGCGATTCAGGGTGTAATGGAGGTCTTATGAATAGTGCTTTTGAATACACTCTGAAAGCTGGCGGGCTTATGAGGGAAAAAGACTATCCATACACAGGAACTGACAACGGTACCTGCAAATTTGATAAAGATAAGATTGTAGCATCGGTGAGTAACTTTAGCGTGGTATCCCTGGACGAAGACCAGATCGCTGCCAATCTTGTGAAAAATGGTCCTCTTGCCGTGGCACTTAACGCAGCTTACATGCAGACATATGTTGGGGGAGTGTCGTGCCCCTACATATGCTCAAAGAGGCTAGACCATGGTGTGCTATTGGTCGGATATGGAAACGCTGGATATTCTCCGATAAGAAGAAAAGAAAAGCCATACTGGATCATCAAGAACTCTTGGGGACCGAATTGGGGAGAAAAGGGATATTACAAAATCTGCAAAGGTCGTAACGTGTGTGGAGTCGATTCCATGGTCTCCACAGTCGTTGCAGTTAACCGACACTAA	1098	45.72	MNNKLMMLLINFTLSLFLVSHVMVGASANEDILIRQVTGGDEADHRHRNNFNVFKRQFNKFYASLEEDEYRFSVFKANWNRAMRHQKLDPSAMHGITQFSDMTSTEFKKHLGLTSRRLRFPADAGKAPILPTDDLPGDFDWRDHGAVTEVKNQASCGSCWSFSTTGALEGAHFLATGNLESLSEQQLVDCDHECDPEVQGSCDSGCNGGLMNSAFEYTLKAGGLMREKDYPYTGTDNGTCKFDKDKIVASVSNFSVVSLDEDQIAANLVKNGPLAVALNAAYMQTYVGGVSCPYICSKRLDHGVLLVGYGNAGYSPIRRKEKPYWIIKNSWGPNWGEKGYYKICKGRNVCGVDSMVSTVVAVNRH	365

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Soca5g02945	365	PANTHER	CYSTEINE PROTEASE FAMILY C1-RELATED	57	352	IPR013128	GO:0004197(PANTHER)\|GO:0005615(PANTHER)\|GO:0005764(PANTHER)\|GO:0008234(InterPro)\|GO:0051603(PANTHER)
	Soca5g02945	365	SMART	pept-c1	135	360	IPR000668	GO:0006508(InterPro)\|GO:0008234(InterPro)
	Soca5g02945	365	ProSitePatterns	Eukaryotic thiol (cysteine) proteases cysteine active site.	153	164	IPR000169	-
	Soca5g02945	365	ProSitePatterns	Eukaryotic thiol (cysteine) proteases asparagine active site.	324	343	IPR025661	-
	Soca5g02945	365	PRINTS	Papain cysteine protease (C1) family signature	324	330	IPR000668	GO:0006508(InterPro)\|GO:0008234(InterPro)
	Soca5g02945	365	PRINTS	Papain cysteine protease (C1) family signature	302	312	IPR000668	GO:0006508(InterPro)\|GO:0008234(InterPro)
	Soca5g02945	365	PRINTS	Papain cysteine protease (C1) family signature	153	168	IPR000668	GO:0006508(InterPro)\|GO:0008234(InterPro)
	Soca5g02945	365	Pfam	Cathepsin propeptide inhibitor domain (I29)	51	107	IPR013201	-
	Soca5g02945	365	ProSitePatterns	Eukaryotic thiol (cysteine) proteases histidine active site.	300	310	IPR025660	-
	Soca5g02945	365	SUPERFAMILY	Cysteine proteinases	45	360	IPR038765	-
	Soca5g02945	365	Pfam	Papain family cysteine protease	135	359	IPR000668	GO:0006508(InterPro)\|GO:0008234(InterPro)
	Soca5g02945	365	CDD	Peptidase-C1A	136	359	IPR039417	-
	Soca5g02945	365	SMART	Inhibitor-I29-2	51	107	IPR013201	-
	Soca5g02945	365	FunFam	Cysteine protease RD19A	32	360	-	-
	Soca5g02945	365	Gene3D	Cysteine proteinases	27	361	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Soca5g02945	K01373	cathepsin F [EC:3.4.22.41]

Event-related genes

Select	Gene_1	Gene_2	Event_name
	157133	Soca5g02945	Soca9g01303

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Soca	Soca-Chr5:32923036	Soca7g03964	Soca-Chr7:67955300	dispersed
	Soca	Soca-Chr5:32923036	Soca7g03963	Soca-Chr7:67955300	wgd
	Soca	Soca-Chr5:32923036	Soca9g01303	Soca-Chr9:14616198	wgd