Gene detail

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Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Soca5g02954	ATGGCGACACACCGCAATGTCCGAAAAACCCTAAGTTCTTACCTAGTCAACAGAATCAACACAACTATACGAACTGGTGATTGTGTATTAATGGGATCGCCAGATCCAAACATACCGCAGTATGTTGCCAAGATTATGAAGATCACATCCTTCGGTAACAATGTGGAAGTTAAGGTCAGGTGGTACTATAGGCCCGAAGAAACTAAAGGTGGTAGACAAGAATATCATGGAGTGAATGAAGTTTTTTCGTCCGATCATTATGATACACAAAGTGTTGAATCGATCGAAGGCAAATGTACCGTTCACAACTTCAAAAGCTACACCGAGCGTGATGCTGTTGATAACAAAGATTTTTACTGTCGTTTTAAGTACTTTCCTTTAACAGGAGAGTTTGATCCGGATAGAACAGTCGTGTACTGTAACTGTGAGATGCCTTATAATCCTGATGTCTTGATGATTGGATGTGAAGCTTGCACTGAATGGTATCATCCTTCTTGTATAGGCATGACAGTGGCGGAGGCCAAACAATCGGATCACTTCATTTGTCAGAAATGTTTGGAGGAAGTTAGATCTTATGTTCGACGTACATTAGTGTGTGATGAAGAAATTGATCAGGAGTCGTCAAACGGTTTCAGTTATGCTTTGTGA	648	40.74	MATHRNVRKTLSSYLVNRINTTIRTGDCVLMGSPDPNIPQYVAKIMKITSFGNNVEVKVRWYYRPEETKGGRQEYHGVNEVFSSDHYDTQSVESIEGKCTVHNFKSYTERDAVDNKDFYCRFKYFPLTGEFDPDRTVVYCNCEMPYNPDVLMIGCEACTEWYHPSCIGMTVAEAKQSDHFICQKCLEEVRSYVRRTLVCDEEIDQESSNGFSYAL	215

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Soca5g02954	215	ProSiteProfiles	Zinc finger PHD-type profile.	137	188	IPR019787	-
	Soca5g02954	215	SUPERFAMILY	FYVE-PHD zinc finger	128	190	IPR011011	-
	Soca5g02954	215	SMART	PHD-3	139	186	IPR001965	-
	Soca5g02954	215	PANTHER	OS08G0421900 PROTEIN	3	188	-	-
	Soca5g02954	215	ProSitePatterns	Zinc finger PHD-type signature.	140	185	IPR019786	-
	Soca5g02954	215	Gene3D	Zinc-RING finger domain, C3HC4 (zinc finger)	133	201	IPR013083	-
	Soca5g02954	215	Gene3D	-	3	132	IPR043151	-
	Soca5g02954	215	ProSiteProfiles	BAH domain profile.	21	135	IPR001025	GO:0003682(InterPro)
	Soca5g02954	215	SMART	BAH-4	21	135	IPR001025	GO:0003682(InterPro)
	Soca5g02954	215	Pfam	PHD-finger	140	185	IPR019787	-
	Soca5g02954	215	Pfam	BAH domain	22	133	IPR001025	GO:0003682(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Soca5g02954	K25868	chromatin remodeling protein

Event-related genes

Select	Gene_1	Gene_2	Event_name
	157135	Soca5g02954	Soca9g01305

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Soca	Soca-Chr5:33008484	Soca8g03245	Soca-Chr8:54424725	dispersed
	Soca	Soca-Chr5:33008484	Soca9g01305	Soca-Chr9:14644841	wgd

Transcription factors information

Select	Gene	Hmm_acc	Hmm_name	Score	E-value	Regulatory Factors	Family
	Soca	BAH	1.8e-19	No_clan		TR	PHD