Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Soca5g02958	ATGGGATCTGCTTGTTGTGTTGCTGCTAGAGATAGAACTATAACAGATCGATCTGGTAGTGATGTTATGACAAGGAATGATCGGTATTCGCCATCATGGAGCTTTCGTTGGGATAATCGAGGGCGTGTAGCAGGTGAAGAGTCATCCATGAATTGCTTGTCTGATGGTGGTGGTACCAACGATAGGTTGGACAATAAATCTCATACAACTGTAGAAACCACTTATGCAACAGAAGGCAGTCCATTGGACAGTTCACGAAGCCTCACCTGGCATAAGCCATCACTTTCTGAAGAAATCGGGGTTCCTCGGTCAGATCCATCAAATTCTAAGAATCTTCATGAAGGGAAGGATTCAAGGGGAGCTTCTGTATCTTTGGAACCGTCTCCAACCAAAATGTCAACACAAACACATTCGGTTTCTTCCTTTTCAGCATCCCCTTTGTCTTCTTCTCAAAGTCAACTCATGCCCCTTTCAAGTTTGACCCCATCAAGGTGGCCCCGCCGTTCGCCAGGTCACCATCTACTACGTCAAGTATCCGATAGCCGAATACGAGGCATGATGTCACCCAACTTTTCAATATCCGAAGAGGGTTCACCTTTTATGCACCCTGGGTGGAGCAATAAATCAAACACGGGGTCTCATGGTGGATCTTCAGATGGTTGGTCTAATAGAGATAGATGGTCTTTTGATAGCGAGTCTCTCAGTTTTAGTCGTGATAGAATTAGCAGATCTAGTGGCAGGGTTTCGTCTTCTCCAACTGTTGAGATACAGACATGCGGCGTCTGCTCCAAACTTTTAACCGAAAGATCCTGTTGGAGTAGCCAAAAAATTGTAGCCACCAATGGGCTTCCGGTTGTTGCAGTTCTGCTATGTGGGCATGTTTACCATGCAGAGTGTTTAGAAAATATGACTCCCGAGATTAACAAGTATGATCCAGCATGCCCTATTTGTACTTTTGGGGTAAAAAAGGTTCTCAAGTTGTCAGAAAAAGCAATGGGGGAAATGGATTTTAAGGGTAAAATCAGCAAGAAATTAAGGAGTCGGGTGGTGGATAGTGGTGATTCGGCTCTGTTTGATCGCTTTACAAGTGGCAGAGGTCCCCGGATGGGTTCAAGTTCAAGCATGAAGAGCTCTACGAGTACTGGAAAGCCGTTTTTAAAGAGACACTTCTCTTTTGGTTACAAACCAAGCAGATCTTTGTCAGATAACGGTTCTAAGAAAAAGAGGTTTTTCTGGTCGAAATCAAGCAAGGAGTGA	1257	44.47	MGSACCVAARDRTITDRSGSDVMTRNDRYSPSWSFRWDNRGRVAGEESSMNCLSDGGGTNDRLDNKSHTTVETTYATEGSPLDSSRSLTWHKPSLSEEIGVPRSDPSNSKNLHEGKDSRGASVSLEPSPTKMSTQTHSVSSFSASPLSSSQSQLMPLSSLTPSRWPRRSPGHHLLRQVSDSRIRGMMSPNFSISEEGSPFMHPGWSNKSNTGSHGGSSDGWSNRDRWSFDSESLSFSRDRISRSSGRVSSSPTVEIQTCGVCSKLLTERSCWSSQKIVATNGLPVVAVLLCGHVYHAECLENMTPEINKYDPACPICTFGVKKVLKLSEKAMGEMDFKGKISKKLRSRVVDSGDSALFDRFTSGRGPRMGSSSSMKSSTSTGKPFLKRHFSFGYKPSRSLSDNGSKKKRFFWSKSSKE	418

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Soca5g02958	418	Gene3D	Zinc-RING finger domain, C3HC4 (zinc finger)	239	319	IPR013083	-
	Soca5g02958	418	SUPERFAMILY	RING-U-box	252	323	-	-
	Soca5g02958	418	MobiDBLite	consensus disorder prediction	74	92	-	-
	Soca5g02958	418	MobiDBLite	consensus disorder prediction	47	66	-	-
	Soca5g02958	418	MobiDBLite	consensus disorder prediction	74	181	-	-
	Soca5g02958	418	MobiDBLite	consensus disorder prediction	123	165	-	-
	Soca5g02958	418	MobiDBLite	consensus disorder prediction	401	418	-	-
	Soca5g02958	418	MobiDBLite	consensus disorder prediction	361	418	-	-
	Soca5g02958	418	MobiDBLite	consensus disorder prediction	195	222	-	-
	Soca5g02958	418	PANTHER	EXPRESSED PROTEIN	1	323	-	-
	Soca5g02958	418	SMART	ring-2	259	317	IPR001841	-
	Soca5g02958	418	MobiDBLite	consensus disorder prediction	366	385	-	-
	Soca5g02958	418	MobiDBLite	consensus disorder prediction	203	222	-	-
	Soca5g02958	418	ProSiteProfiles	Zinc finger RING-type profile.	259	318	IPR001841	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Soca5g02958	-	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	157136	Soca5g02958	Soca9g01316

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Soca	Soca-Chr1:32241539	Soca5g02958	Soca-Chr5:33064446	dispersed
	Soca	Soca-Chr2:49295211	Soca5g02958	Soca-Chr5:33064446	dispersed
	Soca	Soca-Chr2:49295211	Soca5g02958	Soca-Chr5:33064446	dispersed
	Soca	Soca-Chr5:33064446	Soca6g04066	Soca-Chr6:76722408	dispersed
	Soca	Soca-Chr5:33064446	Soca9g01316	Soca-Chr9:14704738	wgd