Gene detail

Gene Search

Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Soca5g02978	ATGTCTCAAGAAGCGCTTGCCATCTGTGCAAAGACCAAACCTCCAGTACTTTTCCGAGAAATCGCGGCGAAGCCAAAAATATGTGAAAAACCTAGCAAGACCTGGTTTGGAGACTGCAAACACACAGAAAAGTGCGACGAGCGGTGCATAGATTGGGAGGGGGCTAAGCATGGAGCTTGCCACCAACGTGAAGCCAAATACATGTGTTTTTGCTACTTTGACTGTGATAGCAAAAAGAATCCAAAAGTACCAAAACCTCCTCCAGGAGCTCCTACTAAACCTCCAGAAGGTGGCGGTGAAGGGGATGCTCCACCAGAAGGCGGTGAAGGAGGAGGAGGAGGTGGTGGTGAAGGAGGAGGAGGCGGCGGTGAAGGAGGAGGTGGAGGTGGTGAAGGAGGCGGTGGCGGTGAAGGAGGTGGTGGTGGTGGTGAAGGAGGAGGAGGTGGTGGTGAAGGAGGAGGAGGAGGTGGTGGTGAAGGAGGTGGCCGATAG	492	54.07	MSQEALAICAKTKPPVLFREIAAKPKICEKPSKTWFGDCKHTEKCDERCIDWEGAKHGACHQREAKYMCFCYFDCDSKKNPKVPKPPPGAPTKPPEGGGEGDAPPEGGEGGGGGGGEGGGGGGEGGGGGGEGGGGGEGGGGGGEGGGGGGEGGGGGGGEGGGR	163

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Soca5g02978	163	MobiDBLite	consensus disorder prediction	79	163	-	-
	Soca5g02978	163	PANTHER	DEFENSIN-LIKE PROTEIN 1	23	75	-	GO:0006952(PANTHER)
	Soca5g02978	163	ProSitePatterns	Gamma-thionins family signature.	26	49	IPR008176	GO:0006952(InterPro)
	Soca5g02978	163	SUPERFAMILY	Scorpion toxin-like	26	75	IPR036574	-
	Soca5g02978	163	Pfam	Gamma-thionin family	26	75	-	-
	Soca5g02978	163	Gene3D	-	27	75	IPR036574	-
	Soca5g02978	163	SMART	gth-4	27	75	IPR003614	GO:0006952(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Soca5g02978	-	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Soca	Soca-Chr5:33304089	Soca5g02979	Soca-Chr5:33315690	tandem

Gene Family Members

Select	Gene	Event_type	S_start	S_end	Function	Ath_gene	Identity(%)	E-value	Score
	Soca4g04568	.	29	69	Plant Defensins gene family	AT5G63660	45.238	6.36e-06	37.7
	Soca1g02631	.	3	73	Plant Defensins gene family	AT5G63660	61.644	2.69e-26	90.1
	Soca2g02553	.	39	78	Plant Defensins gene family	AT1G19610	57.5	3.97e-12	52.8
	Soca1g03606	.	1	77	Plant Defensins gene family	AT2G02100	58.974	2.55e-30	100.0
	Soca1g03605	.	1	77	Plant Defensins gene family	AT2G02100	57.692	2.07e-28	95.5
	Soca2g04130	.	7	78	Plant Defensins gene family	AT1G19610	52.0	7.35e-25	87.0
	Soca2g04131	.	29	78	Plant Defensins gene family	AT1G19610	70.0	2.09e-22	79.3
	Soca2g04071	.	7	78	Plant Defensins gene family	AT1G19610	52.0	9.16e-25	86.7
	Soca2g04072	.	9	78	Plant Defensins gene family	AT1G19610	50.667	5.94e-23	82.0
	Soca5g02978	.	9	78	Plant Defensins gene family	AT1G19610	42.857	2.06e-13	60.5
	Soca5g02973	.	5	73	Plant Defensins gene family	AT1G19610	43.478	2.03e-18	70.1
	Soca5g02981	.	1	78	Plant Defensins gene family	AT1G19610	51.282	3.34e-23	84.0
	Soca5g02979	.	10	78	Plant Defensins gene family	AT1G19610	46.377	2.82e-16	70.5
	Soca5g02975	.	1	78	Plant Defensins gene family	AT1G19610	36.709	1.13e-11	56.2
	Soca5g02974	.	10	78	Plant Defensins gene family	AT1G19610	37.5	6.92e-12	55.5
	Soca5g02972	.	4	78	Plant Defensins gene family	AT1G19610	52.0	2.79e-24	86.7
	Soca4g05297	.	25	77	Plant Defensins gene family	AT2G02130	64.151	1.09e-19	72.4