AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g03016 ATGGGAGGTCATGTTAGCAAAAGATCTGCAGCTTCTACTGCTGCTGCTACGTCTTCGGGTTTGCCTTCGATGTCTTTGAAAGATACCCATCAGATAATATCGGAGTTAAATGTGTATGAGGCCGCGTGTAGATCAGATACGGATTTGCAGTCGTTTGATGCGATGTTACAAGCTAGGGCTAATAATGTGATCAATACTTTGGCCGTGGGAGTTGAGGTTCGGGCATTGTTGTTTGACACGTTGAAGGAAGTTACGGAATGTTTGTTGGAAATGAATCAAGAAGTTGTGAAGGTGATATTGCATTGTAAGAAAGATATTTGGAAGAATCAAGAATTGTTTGAATTGGTGGAGGAGTATTTCGAGAATAGTCTACAAACGCTAGATTTCTGTGCTGCATTGGACAAGTGTTTGAAGAGAGTGAGAGATAGTCAGTTGTTGATTCTTGTAGCTTTGCAGCATTTTGATGAGGATGAAGGTGGAGAGGATGATAAGTATGAAAAGACGCTCGAGGATTTGAAGCATTTTAAGGATGCTGGTGATCCGTTCACTGAGGAATTCTTCACGATTTTTCATTCTGTGTATCGGCAGCAAATGCTGATGCTTGATAAGTTACAAGCTAAGAAAATGAAGTTGGATAAGAAAGTTAAGTATATTCAAACGTGGAGGAAAGTGTCGTCTGTTATCTTTGTGGCTACTTTTGCAGCGGTGTTGATATGTTCTGTGGTGGCGGCTGCTATCGCTGCACCGGCTGTGGCTGCTGCTCTTGCTGCCGCATCTGCTGTCCCTCTTGGTTCAATGGGGAAGTGGATCAACTCCCTTTTAAAGAACTACGAGAATGCCATTAAAGGACAAAAGGAGATCATTAGCTCAATGCAGGTTGGGGGTTTTGTGGCAATCAGGGACCTTGATACAATTCGGGTTCTTGTTGATAGGCTTCAAATGGATATAGAGGAGATGATGAGGAAGGCTGATCATGCAATCGAGGGAGATGAAATGATGAAAATTGCAATCGAGGAAATAAAGATAAAGCTCAATTCGTTTATGAAGAATGTTGATGATTTAGGGTTGCAAGCAGATAATTGCAGCCGTGATGTTAGACGAGCTAGGACTGTCGTCCTGCAAAGGATCATTAAGCCGCCACATAATCAGTGA 1152 42.36 MGGHVSKRSAASTAAATSSGLPSMSLKDTHQIISELNVYEAACRSDTDLQSFDAMLQARANNVINTLAVGVEVRALLFDTLKEVTECLLEMNQEVVKVILHCKKDIWKNQELFELVEEYFENSLQTLDFCAALDKCLKRVRDSQLLILVALQHFDEDEGGEDDKYEKTLEDLKHFKDAGDPFTEEFFTIFHSVYRQQMLMLDKLQAKKMKLDKKVKYIQTWRKVSSVIFVATFAAVLICSVVAAAIAAPAVAAALAAASAVPLGSMGKWINSLLKNYENAIKGQKEIISSMQVGGFVAIRDLDTIRVLVDRLQMDIEEMMRKADHAIEGDEMMKIAIEEIKIKLNSFMKNVDDLGLQADNCSRDVRRARTVVLQRIIKPPHNQ 383
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g03016 383 MobiDBLite consensus disorder prediction 1 21 - -
Soca5g03016 383 PANTHER UPF0496 PROTEIN 3-RELATED 23 378 IPR007749 -
Soca5g03016 383 Pfam Protein of unknown function (DUF677) 49 376 IPR007749 -
Soca5g03016 383 Coils Coil 302 322 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g03016 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr3:18767597 Soca5g03016 Soca-Chr5:33672428 wgd
Soca Soca-Chr5:33672428 Soca7g03125 Soca-Chr7:58021438 wgd