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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g03021 ATGGGCATATGTGCATCAATTCAATCTTCAAAAAGCCAACAAACATTATTAATCACCAATGGCCCAACATCATCATCATCAACAACAACAACAACAACAAAAGTGATCAACTCAATAGATGGGAAGCTACAAGAATTTAGGCAACCAATCAAAGATAGCCACGTTCTATCCGACCAACCCAACTACTTCCTATGTAGTTCCGAAAACATGTTTGTCAACTGTCACGTGCCACACGTGCCAGAAGATGAAGATCTCCAGCCGGGTCAAATATATTTTCTTATGCCAGTTTCAAAGTCTTGTAAGCCACTTTCGTTACAAGAACTTTGTGTGTTGGCGATTAAAGCAAGCTTGGCTCTTGAAAAAAATGAGATAATGAAGAGGACGACGACGACGACGTCGTCGTTTAGTGGACTGCGTAAAAGGAATGGCAATGTAAGAAAGAGATCATCAAATGAGAGGGTGGATTTCCAGTTGGCGTTGAAAAAACTTGCATGA 495 40.61 MGICASIQSSKSQQTLLITNGPTSSSSTTTTTTKVINSIDGKLQEFRQPIKDSHVLSDQPNYFLCSSENMFVNCHVPHVPEDEDLQPGQIYFLMPVSKSCKPLSLQELCVLAIKASLALEKNEIMKRTTTTTSSFSGLRKRNGNVRKRSSNERVDFQLALKKLA 164
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g03021 164 PANTHER DUF4228 DOMAIN PROTEIN-RELATED 30 150 - -
Soca5g03021 164 MobiDBLite consensus disorder prediction 130 150 - -
Soca5g03021 164 Pfam PADRE domain 21 151 IPR025322 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g03021 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr5:33702696 Soca7g03141 Soca-Chr7:58311258 wgd