AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g03029 ATGGGAACATTAGCAGGACATCTGGTCCCTGGTTCGGTCCTTGCTCTGCTCGGATTATGGCACATCATCAATACCGTCCGAGCCTACCACCTCAAAGGCTCGACCCACTTCAAATCAAGCTTTTGGCATCCCTTAGTGAGCCCGGTGTCCAAGCTAGCATACATGGAGCTCATGCTTATTATTTTCTTCTCCATATTTTCCATAGTTATGCAGGTTTTGGATTACCCTTTGTTTTCTTTTGCATTCAAGCTCAATAACTACGAGCATGCCACCATGTTTGTACACTTAGCCATATATGCTGGTTTTACTCTTTACAGTGAGCTAAAACACAAATCCGACATCTTATTTGAAGTTTCTGGAATTCTTGCTGCTTCTGTTTTCGGTCAAGAGCTGTTTTTACTTTATTATCACTCAGCCGATCATGTAGGGCTTGAGGGCCATTACCATTGGCTAATGCAACTTATTGTGATCGTTTCCCTTTTAACAGCAATATCCGTCACCATGATGCCATCCAGCTTCCCTTCATCACTTGTTCTTTCTATATCAGTTGCGTTTCAAGGGTTTTGGTTCATTAACATGGGGTTCATGTTATGGATTCCCGAGTTTGTCCCTAAAGGGTGCACCATACGGTTAGGCCATGGTGGTGACAGTGATATGCACGGCGCAGTCATGTGTGGGAACCACGAGGCGGCTTTAAGGGCTAAAGGGTTGGCTAATTTACAATTCAGCTGGATACTTGCCGCAATTTTAATATTTGTGGGATTTATATGCGTATGTTTCCAGAAAAAGGCCTCCCCTAGGAGTCAAGCTGTTGAGTATGAACGACTTAATAGTCGAATTGCTGAAATCCCTCTTTCGGTCAGTGGATTTAAGCAAGTTACTTACCCATAA 891 43.43 MGTLAGHLVPGSVLALLGLWHIINTVRAYHLKGSTHFKSSFWHPLVSPVSKLAYMELMLIIFFSIFSIVMQVLDYPLFSFAFKLNNYEHATMFVHLAIYAGFTLYSELKHKSDILFEVSGILAASVFGQELFLLYYHSADHVGLEGHYHWLMQLIVIVSLLTAISVTMMPSSFPSSLVLSISVAFQGFWFINMGFMLWIPEFVPKGCTIRLGHGGDSDMHGAVMCGNHEAALRAKGLANLQFSWILAAILIFVGFICVCFQKKASPRSQAVEYERLNSRIAEIPLSVSGFKQVTYP 296
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g03029 296 PANTHER PROTEINASE INHIBITOR I4, SERPIN (DUF716)-RELATED 1 280 - -
Soca5g03029 296 Pfam Family of unknown function (DUF716) 118 257 IPR006904 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g03029 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr1:3050879 Soca5g03029 Soca-Chr5:33825992 dispersed
Soca Soca-Chr4:80239638 Soca5g03029 Soca-Chr5:33825992 dispersed