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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g03030 ATGGCAACAGCCTCAGCCACTCTATCTCCAGTCAACTTCACAGTGGTTGCACCCACAAGGTCATCAAGAAGCAGAACCACCACCACAACCAAAGTGACTTACATCAAGGGCATGAATTCATTTGGTGGGCTTAAAGCTCACAACACTACTGTGGCTGCATTAGGACTTCCTGTTTGCACTGAACAACAATTTGCAAACATTGTTTGTTCATTGAGGAAACCATCATCTAATGGTGGTGCACTCACTTCAACTTGCAGTGCAGTAGCTGAGATTTTCAGGATAGCTGCAATCATGAATGGACTTACACTTGTTGGAGTCGCAGTTGGTTTTGTTCTTCTTCGGATTGAAGCATCTGTTGAAGAAGCTGAGTAA 372 44.09 MATASATLSPVNFTVVAPTRSSRSRTTTTTKVTYIKGMNSFGGLKAHNTTVAALGLPVCTEQQFANIVCSLRKPSSNGGALTSTCSAVAEIFRIAAIMNGLTLVGVAVGFVLLRIEASVEEAE 123
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g03030 123 PANTHER B6F COMPLEX SUBUNIT, PUTATIVE, EXPRESSED-RELATED 1 123 IPR053333 -
Soca5g03030 123 Hamap Cytochrome b6-f complex subunit 7 [petM]. 87 119 IPR012595 GO:0009512(InterPro)
Soca5g03030 123 Pfam PetM family of cytochrome b6f complex subunit 7 90 116 IPR012595 GO:0009512(InterPro)
Soca5g03030 123 SUPERFAMILY PetM subunit of the cytochrome b6f complex 88 120 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g03030 - -