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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g03033 ATGATGATGATAAGATCAGTTCCATATTCTGTGAACTTAGCGCCGTTAGTTCCTCCTCGTCCGTCGTCAAGTAGTACTAGTACCATATGTTGTTCGTCGTCATCAAGAAACAATGGCTATATACCTAAGCTAGAGCCGTTTAGTAGAAGCAAGTTTGACAGAATCGTTAAGGATCCTCCCCTCATCCAGAAATCCGAAAATGATTTAGCAGATTATTGTTCAACACTGGAAGGCGATCCATCTTATAGCTGCTGGAGAGCTTATTTTGAGCTTAAAGAATTTGAAAAAGAAGCGCCAAAGGAAGTGGTGGAGAGAGTGATAATAGAATCAGGAGGCGTGAAATCATTGATTGGATGCTTACACGGAATCTCCGAAATCCACAAGTCAAAAAAGGAAGCAGAACAAAAACACGAATCAATCCTCATTAATGATTTGAAATCGGAAAATACAACAGCAGCTTCTGAAAGTAGAAGAGCAGCATGTCCTGTACCAAGCGGATTGCCAAAGAGTAGGGAAGAGATGGAGGAAGAAGAGAAAGGGAGAATGCCCGATTCGCCTTTCACTCGAATGCTTCGCTCTAAAGGAAGGTCCCCTGCTTGGTACTCCCCTGCTCCTGATCACTAA 624 42.79 MMMIRSVPYSVNLAPLVPPRPSSSSTSTICCSSSSRNNGYIPKLEPFSRSKFDRIVKDPPLIQKSENDLADYCSTLEGDPSYSCWRAYFELKEFEKEAPKEVVERVIIESGGVKSLIGCLHGISEIHKSKKEAEQKHESILINDLKSENTTAASESRRAACPVPSGLPKSREEMEEEEKGRMPDSPFTRMLRSKGRSPAWYSPAPDH 207
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g03033 207 PANTHER CCG-BINDING PROTEIN 1 22 207 IPR037502 GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0010183(InterPro)|GO:0036033(PANTHER)|GO:0036033(InterPro)
Soca5g03033 207 MobiDBLite consensus disorder prediction 147 207 - -
Soca5g03033 207 MobiDBLite consensus disorder prediction 169 185 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g03033 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
157149 Soca5g03033 Soca9g01400
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr5:33850390 Soca9g01400 Soca-Chr9:15570266 wgd