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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g03040 ATGGGAAGCCTAAGTTTGGATTTCAGACCAACTTTTATCCCAAAAACAATCACTATGTTTCTTGAAGAAGTATCGAAAATGGGTAGTTTAAGGGAGAAGGTACTACAAGTTGATCGGTTTGTCAATCGGTTAGAATGCGAAACCACAAAAATAGAAGCATTCAAACATGAACTCCCTCTATCCATGCTTCTTATCAATGATGCAATTGCTGCTTTGAAAGAGGAATCAATGGTGTTGAAGAAATCATCATATGTCGAACCGGTACTTGAAGAATTTATGCCAATTAAGAAAAGTTGTGATGATGATGATATAAAGATTGAAGCCAATATTGGAAATCATAATGACAATGGTGATAAGAAGAATTGGTTGAGCTCTACACATCTTTGGAATACCAATGAGAACCATGATCACGAAGCAAATTCATTCGCGCAAACGATTAAAAAGAGAAATGAGAAAGAAGATGCGACTAGAACCATTTTCAGCCCTGAAATCAATAATCAAATGAGGGGATTTGCTGAAGTTAATGGGAACAGTAGATTGATTCCATTTTCTCCACCAAATGTTCAACCAGTAGATATACAAATTAGAACAAGCATTGTGCATGCACCATCACAACAACAGACGACATATAGGAAACAAAGGAGATCCTGGTCAACCGAGCTGCATAGACGATTTGTCGATGCCTTGCAACAACTTGGAGGTTCACAAGTAGCCACCCCTAAGCAGATTCGAGAGCTTATGCAAGTAGATGGTCTCACCAATGACGAAGTGAAAAGTCATTTGCAAAAATACAGACTTCATACGCGTCGACATTCATCTTCAAATACAAGTGATCATCAAAACGTTGGATCCTCTAAATGTAGCCATTCTCAATCGGGTTCTCCCGATGGCCCCCTCCCGAATGGCGGTAGTAACATGGATGACGAAGATGATAAATCTGAGAACAATTGGTGGAATGGTCGTGTTTAA 969 39.11 MGSLSLDFRPTFIPKTITMFLEEVSKMGSLREKVLQVDRFVNRLECETTKIEAFKHELPLSMLLINDAIAALKEESMVLKKSSYVEPVLEEFMPIKKSCDDDDIKIEANIGNHNDNGDKKNWLSSTHLWNTNENHDHEANSFAQTIKKRNEKEDATRTIFSPEINNQMRGFAEVNGNSRLIPFSPPNVQPVDIQIRTSIVHAPSQQQTTYRKQRRSWSTELHRRFVDALQQLGGSQVATPKQIRELMQVDGLTNDEVKSHLQKYRLHTRRHSSSNTSDHQNVGSSKCSHSQSGSPDGPLPNGGSNMDDEDDKSENNWWNGRV 322
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g03040 322 MobiDBLite consensus disorder prediction 275 299 - -
Soca5g03040 322 Pfam Myb-like DNA-binding domain 214 265 IPR001005 -
Soca5g03040 322 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 209 269 IPR017930 -
Soca5g03040 322 FunFam Myb family transcription factor 211 269 - -
Soca5g03040 322 SUPERFAMILY Homeodomain-like 209 270 IPR009057 -
Soca5g03040 322 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 15 313 IPR044787 GO:0003700(InterPro)|GO:0006355(InterPro)
Soca5g03040 322 NCBIfam myb-like DNA-binding domain, SHAQKYF class 212 267 IPR006447 GO:0003677(InterPro)
Soca5g03040 322 MobiDBLite consensus disorder prediction 305 322 - -
Soca5g03040 322 MobiDBLite consensus disorder prediction 265 322 - -
Soca5g03040 322 Gene3D - 211 269 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g03040 K28176 GARP family transcription factor, NIGT1 subfamily
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr5:33951053 Soca9g02120 Soca-Chr9:24200833 dispersed
Soca Soca-Chr5:33951053 Soca5g03041 Soca-Chr5:33951053 tandem
Soca Soca-Chr2:56016480 Soca5g03040 Soca-Chr5:33951053 wgd
Soca Soca-Chr2:78481916 Soca5g03040 Soca-Chr5:33951053 wgd
Soca Soca-Chr5:33951053 Soca9g01411 Soca-Chr9:15648018 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Soca6g01694 ACH 1 299 G2-like Transcription Factor family AT3G46640 50.456 1.28e-84 257.0
Soca3g00811 ACH 45 200 G2-like Transcription Factor family AT2G40260 55.0 3.16e-45 158.0
Soca9g02257 ACH 1 45 G2-like Transcription Factor family AT1G14600 64.444 4.78e-12 62.0
Soca9g02120 ACH 10 322 G2-like Transcription Factor family AT1G25550 51.13 3.28e-103 306.0
Soca1g03221 ACH 1 312 G2-like Transcription Factor family AT1G25550 42.73 1.45e-74 232.0
Soca5g04200 . 47 211 G2-like Transcription Factor family AT2G40260 53.614 7.96e-42 149.0
Soca5g04199 . 47 211 G2-like Transcription Factor family AT2G40260 51.515 1.44e-41 148.0
Soca8g04173 ACH 42 367 G2-like Transcription Factor family AT4G28610 53.757 4.82e-101 305.0
Socaptg000076l_1g00374 . 18 401 G2-like Transcription Factor family AT5G18240 50.0 2.53e-109 323.0
Soca1g00041 . 1 45 G2-like Transcription Factor family AT1G14600 64.444 1.39e-12 63.5
Soca1g00043 . 1 45 G2-like Transcription Factor family AT1G14600 64.444 1.39e-12 63.5
Soca1g00044 . 1 45 G2-like Transcription Factor family AT1G14600 64.444 1.39e-12 63.5
Soca1g00042 . 1 45 G2-like Transcription Factor family AT1G14600 64.444 1.39e-12 63.5
Soca1g00129 ACH 1 276 G2-like Transcription Factor family AT3G24120 66.899 2.02e-126 360.0
Soca9g03246 . 5 112 G2-like Transcription Factor family AT2G42660 51.304 1.78e-30 115.0
Soca7g01931 ACH 49 186 G2-like Transcription Factor family AT2G40260 59.42 1.52e-46 161.0
Soca5g02007 . 2 335 G2-like Transcription Factor family AT3G10760 51.775 5.82e-73 225.0
Soca9g01411 ACH 4 323 G2-like Transcription Factor family AT2G03500 38.31 3.42e-52 178.0
Soca9g03711 . 1 260 G2-like Transcription Factor family AT2G01060 68.519 7.37e-120 343.0
Soca1g03410 . 1 312 G2-like Transcription Factor family AT1G25550 42.262 2.47e-73 228.0
Soca1g03603 ACH 1 79 G2-like Transcription Factor family AT1G14600 70.886 2.08e-32 118.0
Soca8g03470 . 13 146 G2-like Transcription Factor family AT2G01060 56.716 9.50e-52 168.0
Soca4g04916 ACH 1 386 G2-like Transcription Factor family AT1G32240 50.0 4.41e-84 259.0
Soca4g04915 ACH 1 386 G2-like Transcription Factor family AT1G32240 50.123 1.40e-85 263.0
Soca4g04882 . 1 245 G2-like Transcription Factor family AT5G45580 53.6 3.14e-77 233.0
Soca2g03995 ACH 4 322 G2-like Transcription Factor family AT2G03500 37.677 2.43e-56 189.0
Soca8g05087 . 1 335 G2-like Transcription Factor family AT3G10760 55.786 6.92e-97 287.0
Soca8g04905 . 173 322 G2-like Transcription Factor family AT5G06800 56.579 1.07e-51 172.0
Soca8g04904 . 173 322 G2-like Transcription Factor family AT5G06800 56.579 1.07e-51 172.0
Soca8g04903 . 173 322 G2-like Transcription Factor family AT5G06800 56.579 8.24e-52 171.0
Soca8g04902 . 173 322 G2-like Transcription Factor family AT5G06800 56.579 8.24e-52 171.0
Soca8g04730 ACH 25 223 G2-like Transcription Factor family AT5G59570 52.83 5.71e-60 191.0
Soca8g04635 . 44 174 G2-like Transcription Factor family AT2G40260 53.957 1.51e-35 131.0
Soca8g04022 . 42 367 G2-like Transcription Factor family AT4G28610 53.757 4.28e-101 305.0
Soca8g04019 . 310 367 G2-like Transcription Factor family AT4G28610 81.356 2.15e-24 94.7
Soca5g01811 . 74 140 G2-like Transcription Factor family AT2G40260 70.149 9.35e-27 105.0
Soca4g00323 . 1 403 G2-like Transcription Factor family AT5G16560 42.026 2.20e-74 237.0
Soca6g00049 . 15 178 G2-like Transcription Factor family AT2G01060 46.386 2.14e-47 157.0
Soca6g01119 . 56 376 G2-like Transcription Factor family AT4G28610 49.709 8.16e-95 288.0
Soca5g05537 ACH 1 220 G2-like Transcription Factor family AT3G46640 50.679 2.42e-60 192.0
Soca4g00933 . 1 403 G2-like Transcription Factor family AT5G16560 41.164 2.48e-73 234.0
Soca2g05478 . 196 387 G2-like Transcription Factor family AT1G32240 63.819 2.92e-66 212.0
Soca2g05476 ACH 196 387 G2-like Transcription Factor family AT1G32240 63.5 1.05e-64 208.0
Soca2g05477 ACH 196 305 G2-like Transcription Factor family AT1G32240 84.685 3.57e-58 189.0
Soca7g01977 . 49 186 G2-like Transcription Factor family AT2G40260 59.42 1.58e-46 161.0
Soca7g01976 . 49 186 G2-like Transcription Factor family AT2G40260 59.42 1.58e-46 161.0
Soca2g01692 . 1 432 G2-like Transcription Factor family AT2G03500 48.193 1.69e-127 375.0
Soca2g04680 . 14 163 G2-like Transcription Factor family AT3G12730 68.667 6.88e-69 217.0
Soca5g03040 . 10 310 G2-like Transcription Factor family AT4G37180 37.462 2.61e-49 166.0
Soca5g03041 ACH 2 310 G2-like Transcription Factor family AT4G37180 37.838 1.94e-46 159.0
Soca2g03015 . 4 326 G2-like Transcription Factor family AT2G03500 36.111 6.20e-55 185.0
Soca2g03017 ACH 4 326 G2-like Transcription Factor family AT2G03500 35.294 4.82e-55 186.0
Soca2g03016 . 4 326 G2-like Transcription Factor family AT2G03500 35.44 9.39e-55 184.0
Soca7g02988 . 127 442 G2-like Transcription Factor family AT3G04450 44.807 2.21e-75 239.0
Soca7g03862 . 61 259 G2-like Transcription Factor family AT5G42630 43.621 1.28e-48 162.0
Soca6g00888 ACH 56 376 G2-like Transcription Factor family AT4G28610 50.882 1.07e-95 290.0
Soca8g01395 ACH 5 275 G2-like Transcription Factor family AT3G24120 62.409 8.57e-117 335.0
Soca8g00974 . 3 401 G2-like Transcription Factor family AT5G18240 49.647 1.69e-119 350.0
Soca9g01883 . 25 303 G2-like Transcription Factor family AT1G69580 50.685 3.91e-76 234.0
Soca1g01383 ACH 1 386 G2-like Transcription Factor family AT1G32240 40.594 8.25e-60 195.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Soca Myb_DNA-binding 5e-07 CL0123 TF GARP-G2-like