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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g03071 ATGGCATGCTTAAACATGCAAATCAATAATGAGCAACAACAAGCTGCAGGAGGTTTCTTGGGTCCAAGAATATCATTCTCAAATGATTTTGGTGACACCCAACAAGCAACACAACCCAATATAAAACACAACACTTATAGAGAAGCTCCTGTGTCATCTGAATTCAATTTTGCAGTGCCTTGTTTTGCTTCAAATTCTGCTGATGAAATTTTTTTCAAAGCCAAGATTCTTCCATTAAAGGAGAACATTAAGGCTGTCACACTTAGAGATGAGCTTCTTAATGATGATGATGACGATGACATTTTTTTGCCAAAAAGTTCAGGTTGGTGGAAATTTGGAAGAAGTCAAACTCAAAGTGTAAATCACAATGCTTGTTTGGCTGCTAAGAAAGGTGATCATAAGAATCATGGTGGTTTGGAGACCATTGATGAAGGAAACCAATATCTCAGGAAATGA 456 37.06 MACLNMQINNEQQQAAGGFLGPRISFSNDFGDTQQATQPNIKHNTYREAPVSSEFNFAVPCFASNSADEIFFKAKILPLKENIKAVTLRDELLNDDDDDDIFLPKSSGWWKFGRSQTQSVNHNACLAAKKGDHKNHGGLETIDEGNQYLRK 151
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g03071 151 PANTHER OS06G0675200 PROTEIN 8 118 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g03071 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
157155 Soca5g03071 Soca9g01437
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr5:34326727 Soca7g03206 Soca-Chr7:59082267 wgd
Soca Soca-Chr5:34326727 Soca9g01437 Soca-Chr9:15877684 wgd