AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g05078 ATGGGTGAAATATGCAGGGCGATAAATGAAATCGATGGGAAGAAACAAAGGCTCCGGGAATCATTGAAACACCTTCTTCAATTAAGTAGTAGTAGTAGTGGTAGTGTTGTTGTGAAGAATTTGAAATGGGAGGAATTGGATTCATACTTTAAAACCCTAGAGTCCTCACTCCAAACTAAATTCAATCTCCTCCTCCTTCACAACCAAAACCAATCATCATCCTCATCCTCATCCGAAGAAGAATTGAAACGTTTATGTGAGAATTCAGATGGGTTAGGGTTAAAACAGTATATTATTACTAGTACCAGTATTTCCCCTTCCATTTTGGTTGAGGCTTTCACCCGCTATGCACCTCATACTGCACCCGCTATGGTTCTGGACTCAATTTCTTCATCATCTTCACTTGATGATGATGATGATGATGAATTCCACCCCTCTTCTCCTATCATTATTATGTTGCAAGCTTTAATACGATTTATGCAAAACCAACCACCTACACCTGCTGCTGCTGCTGCTGCTGACATTGAATTATTCAACGAAAAGGCTATGCAGATTGCTCTCCAGTTGAGGACTTCTTCTTCTTCTTCGTTGGGCTTTTTGCTTCTTGTCAAGGCTTATGGTTTGATTCACCTATTTGACGACGATGACCTTATCGATTCCTTTTTCCTTCTTGCCCAAACACAGCCTTCCCATGCTGTCCATCTTTGTCCACAAATTCTTTCCCCCAATCACATCAACGATCTTATTCAGAAACTCATTGATAAACACATGCATATTACTGCTGTCAATTTTAGCATTCAACTTCACACGACTGATCATTTTCCACCAGTTCGTCTCTTGGAAGAGTGCAAGTTAATGTCTATCACAGCTATCGAGGAGGCACGCAACAGTGTAGAAGCTTTTAATGAGGTCATGCTGAGAGAAATCAACACGTTAAAGGCCATTATCAAATGCGTTGATGAGAATCACCTGCAGTCAGAGTACCCAAAGGATAGTGTGGTTGAACTTGTTAACAAACTCGAGAATGAGGTGGAAAATGCCAAGCAAGATCTTGTAAAGAAACCAAAGAACCATCCTGGTAGCAAAAAGCGACCAGCGACAGCACGTGTATCCAAGAAAAAGCCGCTGCCAAAGAAACTAAAACAAAACAAATTTCTTCAAACTGCAGCATCTGCAGAACCACAGAATGTCATGCCGGTTGAAGAACCCCATTCACAGGCATCAGATTTGTTGCCAGGCCATATTGATCAATACCACAGTTCTTCATGTGGGTCTGATCCCACTGCTCCATATACCGGCCCATTTGCGCGTCCTTGTGAGTTAGCAAGAGCAAATAGTGGTCACAGTGGCAATCTGATGCCTGTTGATAATGGGACTGACTTTTTTGTTTCACAGTCACACCCTCTATCTAGTAACAATTCAAATGGTTGGATATCAGAATAA 1443 41.58 MGEICRAINEIDGKKQRLRESLKHLLQLSSSSSGSVVVKNLKWEELDSYFKTLESSLQTKFNLLLLHNQNQSSSSSSSEEELKRLCENSDGLGLKQYIITSTSISPSILVEAFTRYAPHTAPAMVLDSISSSSSLDDDDDDEFHPSSPIIIMLQALIRFMQNQPPTPAAAAAADIELFNEKAMQIALQLRTSSSSSLGFLLLVKAYGLIHLFDDDDLIDSFFLLAQTQPSHAVHLCPQILSPNHINDLIQKLIDKHMHITAVNFSIQLHTTDHFPPVRLLEECKLMSITAIEEARNSVEAFNEVMLREINTLKAIIKCVDENHLQSEYPKDSVVELVNKLENEVENAKQDLVKKPKNHPGSKKRPATARVSKKKPLPKKLKQNKFLQTAASAEPQNVMPVEEPHSQASDLLPGHIDQYHSSSCGSDPTAPYTGPFARPCELARANSGHSGNLMPVDNGTDFFVSQSHPLSSNNSNGWISE 480
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g05078 480 MobiDBLite consensus disorder prediction 403 426 - -
Soca5g05078 480 Coils Coil 330 357 - -
Soca5g05078 480 MobiDBLite consensus disorder prediction 347 384 - -
Soca5g05078 480 PANTHER FRIGIDA-LIKE PROTEIN 3-RELATED 6 62 - -
Soca5g05078 480 Pfam Frigida-like protein 76 349 IPR012474 -
Soca5g05078 480 MobiDBLite consensus disorder prediction 357 380 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g05078 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
5178792 Soca Soca5g05078 Soca-Chr5:68843595 Soca5g05604 Soca-Chr5:77106366