AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g05083 ATGGACTTTTTGTCTTTCTTTGGCAAAACAAGAATATATAATCGTGGTTTTAAGAAAGTGTTGTGTAATCTCCAGACAGCGGAGTTGAACTCACTAATTAAGGAATTAAAGTTAATTCTTTATGGTAATGATGACTCCGAGCCTTCTGAGGAAGCTTGTGCACAACTGAGTGAAGAGTTCTTCAAAGAAGACACATTGCGTCTCCTCATTATATTTCTTCCAAGGTTGAACTTGGAGGCCCGTAAAGATGCCACTCAAGTTGTCACGAGTTTGCAAAGGCAACCTTTGCCATCACGCTTCCAGGCTTCTAGATATCTCGAATCCAATCTAGATCTTGTAGACATCCTGATATCCGGGTATGAGGATCCTCAGTTAGCACTCCATTATGGTAGGATGTTAAAGGAGTGCCTACGTCATCAAATTGTTGCTAGTTACTTACTGGAACCAAATCAGTTGAAGAAACTTTTTGGTTACATAAAACATCCCAGTTTTGATATTGCCGCAGATGCTGCAGATGCCTTCAAGGATCTTTTGACTAGGCATAAGTCAACCGTCTCTGGATCTTTGTCCAAGAACTATATTTGGTTTTTTACTGAATTTAATGAAAAACTACTGAAATCTCCAAACTATATCACCAGAAGACAGGCTGTCAAGTTACTGGGATGCATATTGCTTGATCGTTCGAATTCTTGTGTTATGACGCGCTATGTCAACTCAAAAGAGAACCTAATGATTCTAATGAATCTTCTAAGGGATACTAGTAGGAGCATCCAGATAGATGCTTTTCATGTGTTCAAGCTTTTTGTAGCAAATGAAAACAAGCCTCCGGAAATAGTTAGCATACTTGTTACAAACAGAAGCAAGCTTCTACGATTGTTAGGCGCCTTTGTGCAAACAGGTTACGAACTTGCCTTCTATTTCTGTAACACGGGCTGTTGTCCTTCAAAGTTAATACTCTTATTTGAATGTGGACTTTTTATGTTGTTTGTAGACGATGAAGTGTTTGAGATAGACAAAGTCCAGGTGGTCAATGAACTCGCTGTGCTAGAGTTGCAAGACTAA 1062 39.27 MDFLSFFGKTRIYNRGFKKVLCNLQTAELNSLIKELKLILYGNDDSEPSEEACAQLSEEFFKEDTLRLLIIFLPRLNLEARKDATQVVTSLQRQPLPSRFQASRYLESNLDLVDILISGYEDPQLALHYGRMLKECLRHQIVASYLLEPNQLKKLFGYIKHPSFDIAADAADAFKDLLTRHKSTVSGSLSKNYIWFFTEFNEKLLKSPNYITRRQAVKLLGCILLDRSNSCVMTRYVNSKENLMILMNLLRDTSRSIQIDAFHVFKLFVANENKPPEIVSILVTNRSKLLRLLGAFVQTGYELAFYFCNTGCCPSKLILLFECGLFMLFVDDEVFEIDKVQVVNELAVLELQD 353
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g05083 353 Pfam Mo25-like 26 297 IPR013878 -
Soca5g05083 353 Gene3D - 15 349 IPR011989 -
Soca5g05083 353 PANTHER CALCIUM-BINDING PROTEIN 39-RELATED 26 297 IPR013878 GO:0035556(PANTHER)|GO:0043539(PANTHER)
Soca5g05083 353 SUPERFAMILY ARM repeat 27 296 IPR016024 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g05083 K08272 calcium binding protein 39
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr5:68884718 Soca5g05086 Soca-Chr5:68884718 dispersed
Soca Soca-Chr5:68884718 Soca5g05083 Soca-Chr5:68884718 tandem
Soca Soca-Chr5:68884718 Soca5g05084 Soca-Chr5:68884718 tandem