AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g05088 ATGAAGAGGAAATACATAAAACTTGTTATATTTCTTTTCATTCTGAATTCAATAACTCTTTCACTTTATTTCTCTTCTTCTTCTGATTACTTCCACCGCCGCCGTTCCACCCTTCAACAACACCAACATACTACTACTACTCATTCCAACTTACCCACTCCTCCTCAAACTCAACAACAGCAGAAACCATGGCCGATCTTGCCTTCTTACCTTCCATGGTCTTTAACTTCCAAACCCTCCGTCCCTACTTTCAGATCATGTGAAGCCTATTTTGGTAATGGATTCACTCGCCGTCTCGATCTCCTCCCCAAACAATCACCAGAAACAGATGATGGAGGAGGATGGTTTAGATGTTATTACAGTGAGACTTTACGGAGTTCCATCTGTGAGGGTGGAAGTTTGCGTATGCACCCTGATAAGATCAAGATGTCCACCGGCGGTGAGGTTATAGAGTCTGTCATCGGCCGTTCTGAAGACGAAGAGCTTCCACTCTTTGAACCCGGTGCTTTTGATATACTACAGCAGCAGGTGGTTGATGTTGATGATAAAAAATCCAACAACAAGAAGTTTGTTAGGTTTTTGAATGAGTATTGGCCGAAAGGAGGAAGGCATCCTATGCGTGATCTTATCGATTCCGTTCGTTTAGTTCCCCCCAATCAATTTCATTGCTCTCAGTGGGTTGAGGAGCCAACACTTTTGATCACTCGCTTCGAGTATGCCAACCTTTTTCACACGGTCACCGACTGGTACAGCGCCTATGTGTCTTCCAGAGTTACTGGCTTGCCAAACCGGCCTCAACTGGTTTTCATAGACGGCCACTGTATGACGCAATTGGAAGAAACATGGAGGGCTATGTTCTCAGGTCTAAGATATGCTAAAAGTTTCACTGGTCCTGTTTGCTTTCGTCATGCTATCCTCTCGCCATTAGGGTATGAAACTGCCATGTTCAGGGGTCTGTCTGAAAATATTGAGTGTTATGGAGCTTCAGCCCATGATTTATGGCAGAACCCTGATGACAAAAAAACGGCCCGAATATCAGAATTTGGGGAGATGATACGGGCTGCATTCTCACTTCCCTTACACCGACACCACCACAGTTCAAAATCAGGGTCACAAAATTATAATGTTTTGTTTGTGCGACGTGAGGATTATTTGGCTCATCCTCGCCATGGTGGCAAGGTTCAATCAAGGCTTAGCAACGAACAAGAAGTATTTGATGCATTAAAAATCTGGTCATCGACTCATACAAAATGCAAAATTAATCTAATTAATGGACTGTTTGGGCATATGTCAATGAAGGAACAAGTGATGGCTGTACAAGATGCATCAGTTATTGTGGGTGCTCATGGTGCAGGACTCACTCACATAGTGTCGGCAACAGATGCGGAAATTTTAGAGATTGTTGCGAGCGAGTTTAGGAGACCTCATTTTGAACTAATTTCTCGGTGGAAAGGGCTAAATTACCATCCAATATATTTGAGTGGATCACATGCCAGTCCAACAGTAGTTATTGAAAAGCTCAGGGATATTTTGAAGAGCTTAGGATGTTGA 1551 43.33 MKRKYIKLVIFLFILNSITLSLYFSSSSDYFHRRRSTLQQHQHTTTTHSNLPTPPQTQQQQKPWPILPSYLPWSLTSKPSVPTFRSCEAYFGNGFTRRLDLLPKQSPETDDGGGWFRCYYSETLRSSICEGGSLRMHPDKIKMSTGGEVIESVIGRSEDEELPLFEPGAFDILQQQVVDVDDKKSNNKKFVRFLNEYWPKGGRHPMRDLIDSVRLVPPNQFHCSQWVEEPTLLITRFEYANLFHTVTDWYSAYVSSRVTGLPNRPQLVFIDGHCMTQLEETWRAMFSGLRYAKSFTGPVCFRHAILSPLGYETAMFRGLSENIECYGASAHDLWQNPDDKKTARISEFGEMIRAAFSLPLHRHHHSSKSGSQNYNVLFVRREDYLAHPRHGGKVQSRLSNEQEVFDALKIWSSTHTKCKINLINGLFGHMSMKEQVMAVQDASVIVGAHGAGLTHIVSATDAEILEIVASEFRRPHFELISRWKGLNYHPIYLSGSHASPTVVIEKLRDILKSLGC 516
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g05088 516 PANTHER PUTATIVE-RELATED 9 516 IPR007657 GO:0016757(InterPro)
Soca5g05088 516 MobiDBLite consensus disorder prediction 40 62 - -
Soca5g05088 516 MobiDBLite consensus disorder prediction 35 62 - -
Soca5g05088 516 Pfam Glycosyltransferase 61 365 458 IPR049625 GO:0016757(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g05088 K03714 glycoprotein 2-beta-D-xylosyltransferase [EC:2.4.2.38]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr5:68887374 Soca5g05089 Soca-Chr5:68887374 tandem