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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g05099 ATGGCAACACACAACACAATAATGAGTCTGCTTCAAATACGCACCAACAATCTTTCTTCTTCTTCTTCTTCTTGTTCGGTCTCCACAGGCTGTTCGCTTTCCCCTTTCTTCTCCCCCATGAGGGCCCCACCACGCCGTTCTGCCGTATGTTGTTCTTCTTTTGCTTCCTCAATGGAGTCTGCAAAGATTAAAGTTGTCGGTGTTGGTGGCGGTGGCAACAATGCCGTTAACCGCATGATTGGTAGCGGCTTGCAGGGTGTTGATTTTTATGCCATCAATACGGATTCTCAAGCGCTTCTGCAATCTGTTGCACACAACCCTATTCAAATTGGAGAGCTTTTGACTCGTGGACTTGGTACCGGTGGCAATCCACTTTTAGGGGAACAAGCTGCAGAGGAATCAAAGGAAGCAATCGGAAATGCTCTTAAAGGATCGGATCTTGTGTTCATAACAGCTGGTATGGGTGGCGGTACAGGATCTGGTGCTGCTCCAGTAGTAGCCCAGATAGCAAAGGAAGCAGGATATTTAACTGTTGGTGTTGTTACCTACCCATTCAGCTTTGAAGGACGCAAAAGATCAGTGCAGGCATTGGAGGCTATTGAGAAACTGCAAAAGAATGTTGACACACTTATAGTAATCCCAAATGACCGTCTACTGGATATTGCTGATGAACAGACACCACTTCAAGATGCGTTTCTTCTTGCTGATGATGTACTCCGCCAAGGAGTTCAAGGAATATCAGATATAATTACAATACCTGGTCTAGTAAATGTGGACTTTGCTGATGTTAAAGCGGTGATGAAAGACTCAGGAACTGCAATGCTTGGTGTAGGGGTTTCTTCCAGCAAAAATCGGGCTGAAGAGGCAGCTGAACAAGCAACTCTTGCTCCTTTAATTGGATCATCTATCCAATCTGCTACTGGCGTCGTTTATAACATTACTGGAGGGAAGGACATAACTCTGCAAGAAGTCAATAGGGTGTCTCAGGTGGTAACAAGTTTGGCTGATCCTTCGGCAAACATTATATTTGGGGCAGTTGTGGACGAGAGATACAATGGGGAGATTCATGTGACTATTGTTGCTACAGGATTTGCACAGTCTTTTCAGAAATCTCTTCTGTCAGACCCTAAGGGAGCAAAACTTGTTGATAGAACTCCAGAAATCACGCAACCTTCCATTTCTCCGAAGTCTTTGACCATGCCGTCACCTACTCCATCTCGTTCTAGGAAACTCTTCTTCTAA 1242 45.01 MATHNTIMSLLQIRTNNLSSSSSSCSVSTGCSLSPFFSPMRAPPRRSAVCCSSFASSMESAKIKVVGVGGGGNNAVNRMIGSGLQGVDFYAINTDSQALLQSVAHNPIQIGELLTRGLGTGGNPLLGEQAAEESKEAIGNALKGSDLVFITAGMGGGTGSGAAPVVAQIAKEAGYLTVGVVTYPFSFEGRKRSVQALEAIEKLQKNVDTLIVIPNDRLLDIADEQTPLQDAFLLADDVLRQGVQGISDIITIPGLVNVDFADVKAVMKDSGTAMLGVGVSSSKNRAEEAAEQATLAPLIGSSIQSATGVVYNITGGKDITLQEVNRVSQVVTSLADPSANIIFGAVVDERYNGEIHVTIVATGFAQSFQKSLLSDPKGAKLVDRTPEITQPSISPKSLTMPSPTPSRSRKLFF 413
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g05099 413 Gene3D - 270 375 IPR037103 -
Soca5g05099 413 FunFam Cell division protein FtsZ 1, chloroplastic 55 269 - -
Soca5g05099 413 Pfam FtsZ family, C-terminal domain 271 364 IPR024757 -
Soca5g05099 413 SMART Tubulin-C-4 256 373 IPR018316 -
Soca5g05099 413 ProSitePatterns FtsZ protein signature 2. 146 167 IPR020805 GO:0005525(InterPro)
Soca5g05099 413 SMART Tubulin-4 62 254 IPR003008 GO:0005525(InterPro)
Soca5g05099 413 NCBIfam cell division protein FtsZ 58 371 IPR000158 GO:0003924(InterPro)|GO:0005525(InterPro)
Soca5g05099 413 SUPERFAMILY Tubulin C-terminal domain-like 256 371 IPR008280 -
Soca5g05099 413 FunFam Cell division protein FtsZ 1, chloroplastic 227 364 - -
Soca5g05099 413 Gene3D Tubulin-FtsZ, GTPase domain 53 269 IPR036525 -
Soca5g05099 413 ProSitePatterns Tubulin subunits alpha, beta, and gamma signature. 155 161 IPR017975 GO:0005525(InterPro)|GO:0005874(InterPro)|GO:0007017(InterPro)
Soca5g05099 413 MobiDBLite consensus disorder prediction 390 413 - -
Soca5g05099 413 Pfam Tubulin-FtsZ family, GTPase domain 62 222 IPR003008 GO:0005525(InterPro)
Soca5g05099 413 Hamap Cell division protein FtsZ [ftsZ]. 58 378 IPR000158 GO:0003924(InterPro)|GO:0005525(InterPro)
Soca5g05099 413 SUPERFAMILY Tubulin nucleotide-binding domain-like 61 257 IPR036525 -
Soca5g05099 413 CDD FtsZ-type1 78 363 IPR000158 GO:0003924(InterPro)|GO:0005525(InterPro)
Soca5g05099 413 ProSitePatterns FtsZ protein signature 1. 93 127 IPR020805 GO:0005525(InterPro)
Soca5g05099 413 MobiDBLite consensus disorder prediction 390 406 - -
Soca5g05099 413 PRINTS Cell division protein FtsZ signature 261 282 IPR003008 GO:0005525(InterPro)
Soca5g05099 413 PRINTS Cell division protein FtsZ signature 147 167 IPR003008 GO:0005525(InterPro)
Soca5g05099 413 PRINTS Cell division protein FtsZ signature 238 260 IPR003008 GO:0005525(InterPro)
Soca5g05099 413 PRINTS Cell division protein FtsZ signature 175 196 IPR003008 GO:0005525(InterPro)
Soca5g05099 413 PANTHER CELL DIVISION PROTEIN FTSZ-RELATED 26 385 IPR045061 GO:0003924(InterPro)|GO:0003924(PANTHER)|GO:0005525(PANTHER)|GO:0005525(InterPro)|GO:0005737(PANTHER)|GO:0009507(PANTHER)|GO:0010020(PANTHER)|GO:0032153(PANTHER)|GO:0048285(PANTHER)|GO:0051301(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g05099 K03531 cell division protein FtsZ
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr5:69175003 Soca6g01550 Soca-Chr6:20588092 dispersed