AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g05109 ATGCAGAGGGGACTTTTTCGCTATGATGTAACTGCCTGCGAAACCAAGGTGATTCCAGGTAAGCATGGGTTTATTGCTCAGCTGAACGAGGGCCGTCACCTCAAGAAACGTCCCACCGAGTTCCAAGTCGATAAGGTCCTGCAGCCTTTTGATGAGAACAAGTTTAACTTTACCAAAGTAGGGCAGGAGGAAGTGCTCTTCCGGTTTGAAGCAAGCGGTGACAGTGACGTTCACTTCTATTCAAATGCTCCTATTGATGTGGACAAATCACCAAGTGTTGTTGCTATCAATGTTAGCCCCATTGAATATGGGCATGTGCTTCTGATTCCTCGAATTCTTGAGCGCTTACCTCAAAGGATTGACCACGAGAGCTTAGAGCTTGCTCTGTACATGGCACGTGAGGCTGGAAGTCCGTACTTTCGTCTTGGGTACAATAGCTTGGGCGCATTTGCTACTATCAATCACCTACACTTCCAGGCTTATTACTTGGCTGTGCCATTTCCGATTGAGAAGGCCGCAACAAGAAAGATTACCGCTTTCAATGGTGGGGTCGAGATCTCTGAGATTCTCAACTATCCAGTAAGAGGTCTCGTCTTTGAGGGTGGAAATTGTGTTGAACTATCCAAGGGTGTGGCTGACACCTGCATATGCCTTCAAGAGAACAACATACCTTACAATGTACTCATTTCAGAATGTGGTAGACGCATCTTTGTCCTCCCACAGTGTTATGCTGAGAAACAGGCTTTAGGAGAAGTGAATGCTGAGCTTCTAGATACTCAGGTGAACCCTGCTGTGTGGGAAATCAGTGGACACATGGTGTTGAAAAGGAAGGAGGACTATGAAGGGGCATCTGAGGAAAAAGCTTGGAGACTCCTTGCAGAGGTTTCTTTGTCTGAAGAAAGGTTTCAAGAAGTGATAGCCATTATCTTTGAGGCCATTTCATGTGCTGTTATTGAGAAGAAATTGGCCGAGGATGAGGCGCTGGATGCTGATGAAAGTAGTGTTCTTAACAGCAGTCCCCATGCAGGTACCGTGACTGGGAAGAACGAATGCCTAGTTCAATACTAG 1068 46.35 MQRGLFRYDVTACETKVIPGKHGFIAQLNEGRHLKKRPTEFQVDKVLQPFDENKFNFTKVGQEEVLFRFEASGDSDVHFYSNAPIDVDKSPSVVAINVSPIEYGHVLLIPRILERLPQRIDHESLELALYMAREAGSPYFRLGYNSLGAFATINHLHFQAYYLAVPFPIEKAATRKITAFNGGVEISEILNYPVRGLVFEGGNCVELSKGVADTCICLQENNIPYNVLISECGRRIFVLPQCYAEKQALGEVNAELLDTQVNPAVWEISGHMVLKRKEDYEGASEEKAWRLLAEVSLSEERFQEVIAIIFEAISCAVIEKKLAEDEALDADESSVLNSSPHAGTVTGKNECLVQY 355
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g05109 355 PANTHER GDP-D-GLUCOSE PHOSPHORYLASE 1 1 315 IPR026506 GO:0005737(PANTHER)|GO:0006006(PANTHER)|GO:0080048(InterPro)|GO:0080048(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g05109 K14190 GDP-L-galactose phosphorylase [EC:2.7.7.69]
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Event-related genes

Select Gene_1 Gene_2 Event_name
156566 Soca4g03219 Soca5g05109
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr4:62368711 Soca5g05109 Soca-Chr5:69297465 wgd