Gene detail

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Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Soca5g05110	ATGGATCGTTGTTCATCACCGCCGGAAAAGATTATTTATACATACGGCGTGGAGGTTATCGGAAAAGATCAATCGTGGGATGAAGGAGGCATGATGGAAGATTCGGTTAGAGCTATAGAAGGAATACTGAATTATAAATTTGCAAAAAAAGAATTGTTAGAACAAGCCCTGACCCATTCTTCTTGTTCATCATCATCGTCATCTTCTTCATGTAGTAGTCAATGGTCGGGGAGTTACGAAAGGCTTGAATTTATGGGGGATGCTGCCCTTAGTCTCGCTATTTCCGGCTTGTTTTACTTGATATACCCGGATCTTGACCCCGGTCAACTGTCCCTGCTTCGTGCTGCTAATCTTAGCACTGAAAAACTCGCACGTGTTGCTGTTAAACATCACTTTTATAAGTACATCGAACATAATGCACCTGATGTTCTCGATCATATGGTTAGGGATTTTGTCAAAGTGGTTCAAGAAGAAGACAAGATCGTGGTGCACGGTGGACAAATGAAAGCACCCAAAGTTCTCGCCGATATTGTTGAATCAATCGCTGCAGCGATATATATTGATTGCGGATGGGACCTGAAATCCATGTGGAAGGTAATGAGTGAGATACTTGAACCGTTAGTGATGTTAGATGTCCTGGAGAAACAACCACAACCTATTACAATGCTGTTTGAGTTGTGTAACAAGGATGGGAAGCAAGTTGAAATAAAACACGAGAGAAATGGTAACAGAATCATCGCCACTGTGTATGTGAATGGGGGGTTTGTTGCCACTGCCTCTTCAGATAATAAAGTGAATGCAAAACTTCATGCTGCCGAGGCCGCATTGTGCACATTAACACAGTCAAATACCTACGAACATATTTATGGTGATTATGATGAAGACGCTGAGATTGAAGGTGCCAAGCAAAAAGTATATCAACTTTGCAACAAAAAGAAGTGGCCAAAGCCGAGTTACAGGGTTGAACAAGAGGGTCCTGCGCATGGTAGAATATACATATCGTCCGTGCAAGTTCATGCTTCCGATGGTGAATTTCTAGTGAAGGGTAATAAGAGGTCTAAAGTAAAGGATGCAGAGAACTCTGCTGCCTCTAAGATGTTTCGGAGTTTGCAAAAATCTGGATATATATGA	1131	41.91	MDRCSSPPEKIIYTYGVEVIGKDQSWDEGGMMEDSVRAIEGILNYKFAKKELLEQALTHSSCSSSSSSSSCSSQWSGSYERLEFMGDAALSLAISGLFYLIYPDLDPGQLSLLRAANLSTEKLARVAVKHHFYKYIEHNAPDVLDHMVRDFVKVVQEEDKIVVHGGQMKAPKVLADIVESIAAAIYIDCGWDLKSMWKVMSEILEPLVMLDVLEKQPQPITMLFELCNKDGKQVEIKHERNGNRIIATVYVNGGFVATASSDNKVNAKLHAAEAALCTLTQSNTYEHIYGDYDEDAEIEGAKQKVYQLCNKKKWPKPSYRVEQEGPAHGRIYISSVQVHASDGEFLVKGNKRSKVKDAENSAASKMFRSLQKSGYI	376

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Soca5g05110	376	Gene3D	-	217	287	-	-
	Soca5g05110	376	SMART	riboneu5	51	213	IPR000999	GO:0004525(InterPro)\|GO:0006396(InterPro)
	Soca5g05110	376	CDD	DSRM-SF	306	366	-	-
	Soca5g05110	376	PANTHER	DICER-RELATED	31	336	-	GO:0003723(PANTHER)\|GO:0004525(PANTHER)\|GO:0005634(PANTHER)\|GO:0005737(PANTHER)\|GO:0030422(PANTHER)
	Soca5g05110	376	ProSiteProfiles	Double stranded RNA-binding domain (dsRBD) profile.	218	281	IPR014720	-
	Soca5g05110	376	SUPERFAMILY	dsRNA-binding domain-like	172	280	-	-
	Soca5g05110	376	Gene3D	Ribonuclease III domain	31	216	IPR036389	GO:0004525(InterPro)\|GO:0006396(InterPro)
	Soca5g05110	376	CDD	RIBOc	51	208	IPR000999	GO:0004525(InterPro)\|GO:0006396(InterPro)
	Soca5g05110	376	Pfam	Double-stranded RNA binding motif	219	279	IPR014720	-
	Soca5g05110	376	Pfam	Double-stranded RNA binding motif	301	370	IPR014720	-
	Soca5g05110	376	SMART	DRBM-3	301	371	IPR014720	-
	Soca5g05110	376	SMART	DRBM-3	219	280	IPR014720	-
	Soca5g05110	376	ProSiteProfiles	Ribonuclease III family domain profile.	36	190	IPR000999	GO:0004525(InterPro)\|GO:0006396(InterPro)
	Soca5g05110	376	FunFam	Endoribonuclease dicer-like 1	31	211	-	-
	Soca5g05110	376	Pfam	Ribonuclease III domain	80	190	IPR000999	GO:0004525(InterPro)\|GO:0006396(InterPro)
	Soca5g05110	376	ProSiteProfiles	Double stranded RNA-binding domain (dsRBD) profile.	300	372	IPR014720	-
	Soca5g05110	376	SUPERFAMILY	dsRNA-binding domain-like	287	371	-	-
	Soca5g05110	376	Gene3D	-	307	373	-	-
	Soca5g05110	376	SUPERFAMILY	RNase III domain-like	33	207	IPR036389	GO:0004525(InterPro)\|GO:0006396(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Soca5g05110	-	-

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Soca	Soca-Chr5:69356318	Soca8g00539	Soca-Chr8:7029782	dispersed
	Soca	Soca-Chr5:69356318	Soca5g02881	Soca-Chr5:31921396	transposed