Gene detail

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Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Soca5g05111	ATGGCTGCTCAGGCTGTGGAGGGTGCAGCAGTTACAGCTCTTCGATCCGTTTTTCACCGTGTTCGGCAAGCGGCAGAGAGATCCGGGCGTCACGCTGATGATATTCGGGTGATAGCAGTTAGCAAGACCAAACCTCTCTCTCTTATCCGCCAAGTCTATGATGCTGGTCACCGCTGTTTTGGTGAAAACTATGTCCAAGAATTCATTGAAAAGGCCCCTCAGCTTCCGGAAGATATTGAGTGGCACTTTATTGGGCATTTACAGAGCAACAAAGCTAAATCTTTACTTGCTGCTGTTCCAAATCTTTCGAGGGTACATGGTGTAGATAACGTGAAGATAGCAAACCATCTTGATCGTGCGGTTTCAAGCATAGGAAGAAAGCCCTTGGCTGTTATGGTCCAAGTGAATACAAGTGGAGAAATATCAAAATCTGGGATTGAGCCAGCAAGTTGTGTGGAGCTAGTGAAGCATGTTAAATTTAACTGCCCAAACCTTGTCTTTTCTGGTTTAATGACTATTGGAATGCCAGATTACACATCCACTCCAGAGAACTTCAAGAGTCTATCGAGATGTAAGGTTGAAATCTGCAAGGAACTTGGGATGCCTGAAAACCAGTGTGAACTTTCAATGGGCATGTCTGGCGACTTTGAACTTGCGATCGAAATGGGCAGTACAAATGTAAGGATTGGATCAACCATTTTTGGACCAAGGGATTATTCAAAGAAACAGCAGCAGCAATAA	741	44.53	MAAQAVEGAAVTALRSVFHRVRQAAERSGRHADDIRVIAVSKTKPLSLIRQVYDAGHRCFGENYVQEFIEKAPQLPEDIEWHFIGHLQSNKAKSLLAAVPNLSRVHGVDNVKIANHLDRAVSSIGRKPLAVMVQVNTSGEISKSGIEPASCVELVKHVKFNCPNLVFSGLMTIGMPDYTSTPENFKSLSRCKVEICKELGMPENQCELSMGMSGDFELAIEMGSTNVRIGSTIFGPRDYSKKQQQQ	246

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Soca5g05111	246	Hamap	Pyridoxal phosphate homeostasis protein.	12	236	IPR011078	GO:0030170(InterPro)
	Soca5g05111	246	Pfam	Alanine racemase, N-terminal domain	16	237	IPR001608	-
	Soca5g05111	246	SUPERFAMILY	PLP-binding barrel	11	235	IPR029066	-
	Soca5g05111	246	ProSitePatterns	Uncharacterized protein family UPF0001 signature.	81	95	IPR011078	GO:0030170(InterPro)
	Soca5g05111	246	FunFam	Pyridoxal phosphate homeostasis protein	2	244	-	-
	Soca5g05111	246	PANTHER	PROLINE SYNTHETASE CO-TRANSCRIBED BACTERIAL HOMOLOG PROTEIN	4	243	IPR011078	GO:0005622(PANTHER)\|GO:0030170(InterPro)\|GO:0030170(PANTHER)
	Soca5g05111	246	PIRSF	YBL036c-PLPDEIII	1	243	IPR011078	GO:0030170(InterPro)
	Soca5g05111	246	CDD	PLPDE-III-YBL036c-euk	14	235	-	-
	Soca5g05111	246	Gene3D	Alanine racemase	2	246	IPR029066	-
	Soca5g05111	246	NCBIfam	YggS family pyridoxal phosphate-dependent enzyme	17	237	IPR011078	GO:0030170(InterPro)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Soca5g05111	K06997	PLP dependent protein

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Soca	Soca-Chr5:69368308	Soca8g03230	Soca-Chr8:54159136	dispersed