AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g05116 ATGCAGGTTGTAGAAAAGAGCTTCAAGGGTTTAGCTTATATCCGTGTAAATGACGGATCATATGCTCAACAATTAATTGTCTACACAGAATCCAGAAGCGACCTAGATTTGCTTATGAAAGAGGTTAAAGGAAGCCATTTTAAGGAAGCAGAGATGAAGATAGGAGCCGCCATTGGCTTCCGGCATGTAATCGACCTCCTTTCCTCCGAACAAAAGTTGATTGTTGGTCACAATTGCTTTCTTGATATTGCACATGTATGTAGAAAATTCATAGGTCCTCTTCCTTCGAATCTCAAGGAATATGTTACATTGGTTCAAAAAAACTTTCCGTACATAATTGACACTAAGATCCTCCTGAATGGAAATAGCATGTTGCAATTAAAGATGAAGAAGAGTAGCACATCCCTGGCTAAAGCTTTTGCCATCATGTGTCCGCATATTGCTTCCGGTGATAACATGCTTGGTCCGGCTGAAAGTTCCTCTGTCTCGGTGGAGGTTCAAGTGGATGATATGAGTTCATCAAGCTGGAACTCTGGAGCTAAACATGAAGCTGGTTATGATGCCTTCATGACAGGGTGCATTTTTGCCCAAGCATGCAATCATCTTGATATCAATTTCACTTCTAATTTGATGTTGATGAAAGAAGAGAAGCTTCAAAACTACATCAATCTTCTTTACCTCAGCTGGACCAGTGGAGACATAGTTGACCTAAAAACTGGTGAAGCTACAACCGAATGTTCAGCATTCATGACTTTTAAAATCCAACAACCGAAGATTCTGTTTCCAAATATTGTCTTAATTTGGGGCTTCTCTTCTACTCTCAAGGCAAAACAGATAAAAGAATCTCTGTGTAAAGTTTTTGGGTTGACTTCAGTTACATCCATCTACCATTTGGATAAGACTGCTGTGTTTGTTCTATTTAGCAAACCAGAATTGGTTTATGATTTTTTGGAACTAAAATCAAAGATGGAAAAGAAGAACGAAGCACTTTACGTTTTACACCCTCTTTCAGATCTTCTCGAAGGGGGACGTACCCGTGCTGCTTCTTACGAGGTATACAAAGACATATGTGGTTCACCCCTTTCCAAAGTCTTCTTCGCTGATCAAGCTGAAGCTGTTGGTGTTGATTTGAACACCAAAATGTTAGAAAGTAAGGCTCATAAAAATGGTTCTTTTGATAATTCACACATCCCAATGAATACCAAGACAGCAGAAACTGAACAACCAATGAAGTCTTCATCAGGTAGCAGAAATTCGCATAGAGAAGAAATACTAGATATAGTATCTTGCTGA 1293 39.21 MQVVEKSFKGLAYIRVNDGSYAQQLIVYTESRSDLDLLMKEVKGSHFKEAEMKIGAAIGFRHVIDLLSSEQKLIVGHNCFLDIAHVCRKFIGPLPSNLKEYVTLVQKNFPYIIDTKILLNGNSMLQLKMKKSSTSLAKAFAIMCPHIASGDNMLGPAESSSVSVEVQVDDMSSSSWNSGAKHEAGYDAFMTGCIFAQACNHLDINFTSNLMLMKEEKLQNYINLLYLSWTSGDIVDLKTGEATTECSAFMTFKIQQPKILFPNIVLIWGFSSTLKAKQIKESLCKVFGLTSVTSIYHLDKTAVFVLFSKPELVYDFLELKSKMEKKNEALYVLHPLSDLLEGGRTRAASYEVYKDICGSPLSKVFFADQAEAVGVDLNTKMLESKAHKNGSFDNSHIPMNTKTAETEQPMKSSSGSRNSHREEILDIVSC 430
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g05116 430 MobiDBLite consensus disorder prediction 388 430 - -
Soca5g05116 430 MobiDBLite consensus disorder prediction 391 415 - -
Soca5g05116 430 Pfam CAF1 family ribonuclease 44 195 IPR006941 -
Soca5g05116 430 Gene3D - 16 241 IPR036397 GO:0003676(InterPro)
Soca5g05116 430 SUPERFAMILY Ribonuclease H-like 56 210 IPR012337 -
Soca5g05116 430 PANTHER POLY A -SPECIFIC RIBONUCLEASE-TARGET OF EGR1, MEMBER 1 2 373 IPR051181 GO:0000175(PANTHER)|GO:0003723(PANTHER)|GO:0005737(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g05116 K01148 poly(A)-specific ribonuclease [EC:3.1.13.4]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr5:69437853 Soca5g05116 Soca-Chr5:69437853 tandem