Gene detail

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Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Soca5g05130	ATGCCAAAAGTAGCAATATGGGATCTGCCCGAGCTGCCCAAGAATCAGCTGCCACCTCATCTTCAACTCCAAAAAACACGCGTCTCATGTAACAACGATGCTCCAACTCATACGGAGAATATTACATATTCAGGTGCATATGCATCAATGGGAGTTGATAATATGGTTAGGTTAAATGATTTTAAGGAAAAGTTTCAAGTTAAAGTTACCAAGCTTAATGAAGAAGATATGGAGTTCGATTTGATCGGAATCGATGCTTCCATTGCCAATGCCTTTAGGCGAATCCTCATTTCCGAGGTGCCCACAATGGCAATTGAGAAGGTTCTTGTTGCTAACAGTTCATCGGTGGTACAAGATGAAGTACTTGCTCACCGATTGGGTCTCATACCGATAAAGGTTGACCCAAGGCTGTTTGATTATATGTCAGAAAATGACGTCCCTAATGAAAAAAATTCGATTGTTTTTAAACTCAATTTCAAGTGTGAGCGAAAATCTGGTGAACGTCGGACAGTGTACTCTCATGATATGAAGTGGTTACCATTTGGCAGTGAATACGTGCTGCCCACAGAAACTCCTTCGGATACAACATCAAAACCAAAAACATACACATCATTTACTTCCAGCCAAGACTCCATGCCAGAGTTTTTGCATAATCCTATCTCTGTGACTCCTGGTATCATCATATCAAAACTTGGTCCAGGGCAGGAAATCGAGCTAGAAGCGCACGCCATTAAAGGCCTTGGTAAAACACATGCCAAATGGTCTCCTGTGGCCACTGCTTGGTACAGAATGCTTCCCGAGGTTATATTGCTGCAAGACATTGAGGACGAGGACGCTGAGATACTTGTAAAGAAATGCCCAGTTAATGTGTTTGACATTGAAGATATCGGTAAAGTCACTATAGAATCTACTGGAGCATTGACTCCTGAGGTGCTATTTACTGAAGCTGTCAAGATTTTGGAAGACAAGTGTGAACGTGTGATAACTGAGCTCTCATAG	999	42.04	MPKVAIWDLPELPKNQLPPHLQLQKTRVSCNNDAPTHTENITYSGAYASMGVDNMVRLNDFKEKFQVKVTKLNEEDMEFDLIGIDASIANAFRRILISEVPTMAIEKVLVANSSSVVQDEVLAHRLGLIPIKVDPRLFDYMSENDVPNEKNSIVFKLNFKCERKSGERRTVYSHDMKWLPFGSEYVLPTETPSDTTSKPKTYTSFTSSQDSMPEFLHNPISVTPGIIISKLGPGQEIELEAHAIKGLGKTHAKWSPVATAWYRMLPEVILLQDIEDEDAEILVKKCPVNVFDIEDIGKVTIESTGALTPEVLFTEAVKILEDKCERVITELS	332

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Soca5g05130	332	SUPERFAMILY	RBP11-like subunits of RNA polymerase	63	331	IPR036603	GO:0006351(InterPro)\|GO:0046983(InterPro)
	Soca5g05130	332	Gene3D	-	102	252	IPR036643	-
	Soca5g05130	332	Pfam	RNA polymerase Rpb3-RpoA insert domain	122	253	IPR011262	GO:0003899(InterPro)\|GO:0006351(InterPro)\|GO:0046983(InterPro)
	Soca5g05130	332	Gene3D	-	276	332	IPR036603	GO:0006351(InterPro)\|GO:0046983(InterPro)
	Soca5g05130	332	SMART	rpoldneu2	76	330	IPR011263	GO:0003899(InterPro)\|GO:0006351(InterPro)
	Soca5g05130	332	Pfam	RNA polymerase Rpb3-Rpb11 dimerisation domain	78	324	IPR011263	GO:0003899(InterPro)\|GO:0006351(InterPro)
	Soca5g05130	332	Hamap	DNA-directed RNA polymerase subunit Rpo3 [rpo3].	66	331	IPR022842	GO:0003899(InterPro)\|GO:0006351(InterPro)
	Soca5g05130	332	CDD	RNAP-I-II-AC40	65	330	IPR033901	GO:0001054(InterPro)\|GO:0001056(InterPro)
	Soca5g05130	332	SUPERFAMILY	Insert subdomain of RNA polymerase alpha subunit	101	256	IPR036643	-
	Soca5g05130	332	MobiDBLite	consensus disorder prediction	189	210	-	-
	Soca5g05130	332	PANTHER	DNA-DIRECTED RNA POLYMERASE	22	294	IPR050518	GO:0001054(PANTHER)\|GO:0001056(PANTHER)\|GO:0003899(PANTHER)\|GO:0005666(PANTHER)\|GO:0005736(PANTHER)

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Soca5g05130	K03027	DNA-directed RNA polymerases I and III subunit RPAC1

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Soca	Soca-Chr5:69579358	Soca2g03874	Soca-Chr2:75955132	transposed
	Soca	Soca-Chr5:69579358	Soca2g03065	Soca-Chr2:56695463	transposed