AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g05136 ATGGAACTCATTCCATACTCTGATCCAAACACCACCACCTCACCACCGTGGCAAGACATGTTCCGGTCAGCTTCTACCCTCAAACCACCATCTCCACCACCACAATCCACCACAAAAAACACCCCAGATGATCAAAAAGATTCACCATCATCATCATCATCATCTTTTTCAGGTGACCAACATGTACGTTTAGCATTATATATAGCCATGGCACATGCTGGCTTAGCTTTTGCTATATTTATACTTTATGGTGTTTGTAAATTACTTGAAGAATATTTAAGGCCTATTTTATGGGCTGTTCTTTGTTCTATTCCACTTAGAGGTATTCAACAGACCCTTGTTTTGTTTTGGACTAAACCTTTAGAATTAGGCCTTGTTGATACTATATTAGCTATACCTGTTTCTATATATAATGTTTTTACTGGGACATTAGTTGATGTTAAAGATTTGTTGTATAGACTTGTTTGGGTTAAGAAGGAAAGAAAACCTAATCGAAAGAGAACCGGGTTTTCGATATTGTTAAGATGGTTGGTGTCTTTTTGGGTTTTTGTTATGGCTTATGAATATTTTGGTGTTTTTGGTGGTGTTAGTTTGTTGGGGTTGGGCTTTATGTTTACTTCTAGTAATGTGAAGTCTAGTTTGTCGGTTATTTCTTCGTTTTGTGGTGGTCGTGGTGAACAAAGTCGTTATACGGGTTTTTTAACGAAAGGGGTTTTGAAAAGGTTGGAGACCATTGTGGCGATCGGGTTGATTTTTGGTATGATTTTGGGTTCTTTGAGTGTGACTGTGTTTTTTTCGTATAAGATTGGGGTTGAAGGGAAAGATGTGGTGTATTCGATAAAATCTCGTGTTGAAGAGAATAATTATGCCGAGAGAATAGGGTTAAGAAAATGGGTGGATGATAACAATGTGCCAGGAATGGTGGATAAGTACGCGACTCAGTTTTATGAAACTGTGAATGAACAGATTGATAGTTTGGCAATGCAGTATAATGTGACGGAAATTGTTCAGGAAATGAAACAAGTGATTGCGCCAAGGTTAACCCCGACAAACTCTTCTACACCTTCTACCGCAATAGTAACGTCTAGCCCGTACGCTGAAAAGATACGAAGTTTGAAAAAAATGTTTACTAATCGTGAATGGTCAGCAATCTATCCAGAAGTTAATGCTTTGTTAAAAGAGGCTCGGGTTAGCAAAGCAGATATGATTGAAAAAGCTAAAGCAATTGCTTTTCAAGGAAAAGATGTGCTTCAACGAGTGCTTGCAAGTAGTAAATCGATTGTTGGAGGCAGTACTAAGCTTGTTTTGATAGTTATTGAGTCGATTGTTTCTGGAGCAGCGGGTCTTTTTAATTTTGTTTCGCAGTTGATGGTTTTCATATGGGTTTTGTACTCTTTGATAACTTCAGATTCTGGTGGAGTTACAGAAAAAGTTATGCATATGATTCCAATTTCAAGATCTGCTAGGACACGGTGTGTTGAGGTTCTTGATAAAGCCATTTCCGGAGTTCTTTTGGCTACAGTAGAGATTGCCTTTTTTCAAGGATGTCTCACTTGGCTTTTATTTAGACTTTTTAATATCCATTTCTTGTATATGTCAACGCTGCTTGCATTTATCAACCCTTTGCTCCCGATATTTCCCTATTTTTTCTCAACAATTCCAGCAGCAATGCAATTGGTACTGGAAGGTAGATATGTTGATGCTGTTTGCTTGTCGATTATTCACCTTGTGCTTATAGACTATGGTACTACCGAGATTTTAGAGGACGTACCTGGTTATAGTGCATATCTCACTGGGCTCAGTATCATTGGTGGAGTGGCATTGTTCCCATCTGCATTGGAGGGAGCGATAATGGGGCCATTGATAACGACTGTTGTTATTGCTCTTAAGGATTTGTATGTAGAATATGTTTTGGATGAACCAAAAGAAGATAAAAAGGAGTAA 1944 38.27 MELIPYSDPNTTTSPPWQDMFRSASTLKPPSPPPQSTTKNTPDDQKDSPSSSSSSFSGDQHVRLALYIAMAHAGLAFAIFILYGVCKLLEEYLRPILWAVLCSIPLRGIQQTLVLFWTKPLELGLVDTILAIPVSIYNVFTGTLVDVKDLLYRLVWVKKERKPNRKRTGFSILLRWLVSFWVFVMAYEYFGVFGGVSLLGLGFMFTSSNVKSSLSVISSFCGGRGEQSRYTGFLTKGVLKRLETIVAIGLIFGMILGSLSVTVFFSYKIGVEGKDVVYSIKSRVEENNYAERIGLRKWVDDNNVPGMVDKYATQFYETVNEQIDSLAMQYNVTEIVQEMKQVIAPRLTPTNSSTPSTAIVTSSPYAEKIRSLKKMFTNREWSAIYPEVNALLKEARVSKADMIEKAKAIAFQGKDVLQRVLASSKSIVGGSTKLVLIVIESIVSGAAGLFNFVSQLMVFIWVLYSLITSDSGGVTEKVMHMIPISRSARTRCVEVLDKAISGVLLATVEIAFFQGCLTWLLFRLFNIHFLYMSTLLAFINPLLPIFPYFFSTIPAAMQLVLEGRYVDAVCLSIIHLVLIDYGTTEILEDVPGYSAYLTGLSIIGGVALFPSALEGAIMGPLITTVVIALKDLYVEYVLDEPKEDKKE 647
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g05136 647 PANTHER TRANSMEMBRANE PROTEIN 20 644 IPR002549 -
Soca5g05136 647 MobiDBLite consensus disorder prediction 1 25 - -
Soca5g05136 647 MobiDBLite consensus disorder prediction 1 57 - -
Soca5g05136 647 MobiDBLite consensus disorder prediction 38 57 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g05136 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
155636 Soca2g04597 Soca5g05136
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr2:90398422 Soca5g05136 Soca-Chr5:69632320 dispersed