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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g05180 ATGGCATCTTTTAATAGAGTTTTCATTGGTAGTCTACCAACAGTTGGGCCTAGAAAGTATGTGGTACGGTTACCGAATAATAATACACCTACGTCATCTCATTTAAACTATTCTTCTATCCCTACAACAATGACGACCATCGATATGAAGTCCAACTTCCAGCAAGTTTATGATACTTTGAAATATGAGCTACTTCATGATCCCTCATTTGTATTTGATAACGATTCTCGTCAGTGGGTTGAGAAGATGATCGACCACAATGTACCTGGAGGAAAGATGGTCCGAGGCCTTTCTGTTGTTGACAGCTACCGGTTGCTTAAAGGAGAACAACTCACAGATAATGAAGTTTTTCTTGCTTGTGCTCTTGGTTGGTCCATTGAGTGGTTTCAAGCATATTTTCTTGTACAAGATGACATAATGGATGGCTCCAATACCCGCAGAGGTCAACCCTGTTGGTTCAGACTACCCGAGGTTGGCATGACTGCTGTAAATGACAGTGCTATTCTTCGGTCCCATGTCTTCAGGATCCTTAAGAAATATTTCCAAAAAAAGTCTTATTATGTGCATCTACTGGACCTCTTCAATGAGGTGGAATTTCAAACAATCTCTGGGCAAATGATTGATGCGATTGCTACACATAATGTCGGAGAGAAAGATCTGTCAAAGTACACTTTGTCTCTTAACCGTCGCATTGTTGCATACAAAAGCTCTTATTACTCAATGTACCTTCCGGTTGCATGCGCATTTCTTATGTTTGGAGAGAATTTGGATGATCATATTCAAATGAAAGATATCCTTGTTGAATTGGGTATCTATTATCAAGTGCAGAATGATTATCTTGACACTTTTGGTGATCCTGATGTGTTTGGCAAGATTGGAACAGATATTGAAGAACACAAGTGTTCGTGGTTGGTTGCGAAAGCACTGGAACTTGCCAACAAGGAGCAAAAGAAAATTCTGAACGAAAACTACGGGATAAAGGATCCAACTTGTGTAGCAAGTGTGAAGGACCTATACCATACTCTCAATCTTGAGGGTGCGTATGAAGACTACGAGAACAAGACTTATGAGGAGTTGGTCAAATCAATTGAAGCTTACCCAAACAAAGTAGTGCAGGCAGTAATGAAATCATGCTTGAGAAAGATATATAGGAAGCATATATGA 1164 39.78 MASFNRVFIGSLPTVGPRKYVVRLPNNNTPTSSHLNYSSIPTTMTTIDMKSNFQQVYDTLKYELLHDPSFVFDNDSRQWVEKMIDHNVPGGKMVRGLSVVDSYRLLKGEQLTDNEVFLACALGWSIEWFQAYFLVQDDIMDGSNTRRGQPCWFRLPEVGMTAVNDSAILRSHVFRILKKYFQKKSYYVHLLDLFNEVEFQTISGQMIDAIATHNVGEKDLSKYTLSLNRRIVAYKSSYYSMYLPVACAFLMFGENLDDHIQMKDILVELGIYYQVQNDYLDTFGDPDVFGKIGTDIEEHKCSWLVAKALELANKEQKKILNENYGIKDPTCVASVKDLYHTLNLEGAYEDYENKTYEELVKSIEAYPNKVVQAVMKSCLRKIYRKHI 387
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g05180 387 ProSitePatterns Polyprenyl synthases signature 1. 134 148 IPR033749 -
Soca5g05180 387 Gene3D Farnesyl Diphosphate Synthase 42 386 IPR008949 -
Soca5g05180 387 Pfam Polyprenyl synthetase 78 341 IPR000092 GO:0004659(InterPro)|GO:0008299(InterPro)
Soca5g05180 387 FunFam Farnesyl pyrophosphate synthase 42 386 - -
Soca5g05180 387 SFLD Polyprenyl Transferase Like 50 384 - -
Soca5g05180 387 PANTHER FARNESYL-PYROPHOSPHATE SYNTHETASE 49 385 IPR039702 GO:0004161(PANTHER)|GO:0004337(PANTHER)|GO:0005737(PANTHER)|GO:0008299(InterPro)|GO:0016765(InterPro)|GO:0045337(PANTHER)
Soca5g05180 387 SUPERFAMILY Terpenoid synthases 66 385 IPR008949 -
Soca5g05180 387 SFLD Isoprenoid Synthase Type I 50 384 - -
Soca5g05180 387 CDD Trans-IPPS-HT 75 322 IPR000092 GO:0004659(InterPro)|GO:0008299(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g05180 K00787 farnesyl diphosphate synthase [EC:2.5.1.1 2.5.1.10]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr5:70103705 Soca5g05180 Soca-Chr5:70122496 proximal
Soca Soca-Chr5:70122496 Soca5g05181 Soca-Chr5:70162377 tandem
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Soca2g03836 . 40 80 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 56.098 2.39e-08 52.0
Soca5g05181 . 45 342 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT4G17190 76.174 2.51e-166 463.0
Soca5g05180 . 37 383 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 63.506 1.32e-165 467.0
Soca5g05178 . 37 383 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 63.506 1.32e-165 467.0
Soca5g05174 . 41 307 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 78.022 2.29e-157 443.0
Soca5g05173 . 41 307 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 79.775 7.16e-160 449.0
Soca5g05169 . 40 383 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 54.203 5.37e-128 370.0
Soca5g05159 . 41 307 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 75.0 4.82e-148 421.0
Soca5g05161 . 3 182 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT4G17190 78.889 3.02e-103 298.0
Soca5g05160 . 3 201 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT4G17190 79.899 2.76e-117 336.0
Soca5g05165 . 3 182 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT4G17190 78.889 3.02e-103 298.0
Soca5g05167 . 3 182 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT4G17190 78.889 3.02e-103 298.0
Soca5g05164 . 3 201 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT4G17190 79.899 2.76e-117 336.0
Soca5g05166 . 41 257 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 78.802 1.74e-126 361.0
Soca5g05163 . 3 182 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT4G17190 78.889 3.02e-103 298.0
Soca5g05162 . 41 257 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 78.802 1.74e-126 361.0
Soca5g05158 . 37 383 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 60.615 1.13e-156 445.0
Soca5g05156 . 37 383 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 60.615 1.94e-157 447.0
Soca5g05154 . 41 307 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 79.026 7.13e-156 444.0
Soca5g05152 . 80 307 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 82.895 3.93e-140 397.0
Soca5g05153 . 41 307 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 79.026 6.63e-158 444.0
Soca5g05149 . 20 379 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 59.28 1.52e-154 439.0
Soca5g05141 . 204 383 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 48.352 5.40e-51 165.0
Soca5g05142 . 45 383 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 57.55 3.06e-140 401.0
Socaptg000718l_1g00073 . 40 384 FARNESYL DIPHOSPHATE SYNTHASE (FPS) gene family AT5G47770 77.971 0.0 562.0