AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g05187 ATGGCTTCGGATACAGAGACGTTTGCATTCCAAGCGGAGATCAACCAGCTTTTGAGTCTCATTATCAACACTTTTTACAGCAACAAAGAGATCTTTCTTCGAGAGCTTGTTAGCAACGCCTCCGATGCTCTGGATAAAATTCGCTTCGAGAGCTTGACTGATAAGAGTAAGCTAGATGCTCAACCAGAGCTGTTCATCCACATCATTCCCGATAAAACCAACAACACATTGACCATCATTGACAGTGGAATTGGGATGACAAAAGCTGATTTGGTGAATAATTTGGGAACCATTGCTCGATCTGGTACCAAAGAATTCATGGAAGCTCTTGCTGCTGGTGCTGATGTTAGCATGATTGGACAGTTTGGTGTTGGGTTCTACTCGGCTTATCTGGTTGCTGAGAAAGTCATTGTCACCACAAAACACAATGATGATGAGCAGTATGTTTGGGAGTCACAAGCAGGTGGTTCATTCACCATCACCCGTGATGAAAGTGAGCCGCTTGGCAGGGGTACAAAAATTACCCTTTACCTCAAGGAAGACCAGCTTGAGTATCTAGAGGAACGCAGACTCAAGGACCTGATCAAGAAGCATTCTGAGTTCATTAGTTACCCAATCTCTCTTTGGGTTGAGAAGACAACCGAGAAGGAGATATCTGATGATGAGGACGAGGAAGAGAAGAAAGACGAGGAAGGCAAAGTCGAGGAGGTTGATGAAGAAAAAGAGAAGGAGGAAAAGAAAAAGAAGACTATCAAGGAAGTGTCACATGAATGGGATTTAATGAACAAGCAAAAACCCATCTGGATGAGGAAACCAGAGGAGATCTCTAAGGAAGAGTATGCTGCTTTCTACAAGAGCCTCACAAACGATTGGGAGGAGCACTTGAATGTAAAGCACTTCTCAGTTGAAGGGCAGTTGGAATTTAAGGCTGTTCTTTTTGTTCCCAAAAGAGCCCCCTTTGACCTCTTTGACTCAAAGAAGAAGCCCAACAACATCAAGCTTTATGTTCGTCGTGTATTCATTATGGACAACTATTCTTTGAAGGAGAAGTTTGAGGGTTTGTGTAAGGTGATTAAGGATGTGTTGGGTGACAAGGTTGAGAAGGTGGTTGTTTCTGACCGTGTGGTTGACTCACCTTGTTGTTTGGTTACCGGGGAGTATGGATGGACCGCCAACATGGAAAGAATAATGAAGGCACAAGCGTTGAGGGATGCCAGCATGGCCGGATACATGTCCAGTAAGAAAACCATGGAGATCAACCCCGAGAACTCAATTATGGAGGAGCTGAGGAAGAGGGCTGATGCAGACAAGAATGACAAGTCTGTCAAGGACTTGGTGCTGTTGCTGTTCGAGACTGCTTTGTTGACTTCTGGTTTTAGCCTTGATGAACCGAACACTTTTGGTAACAGGATTCATAGGATGTTGAAGCTTGGGCTGAGCATTGATGAAGATGCAGGTGAGGATGCTGACATCCCTGCTCTTGAAGAGGCTGACGTTGATGCTGATGGCAGCAAGATGGAGGAAGTCGACTAA 1533 44.75 MASDTETFAFQAEINQLLSLIINTFYSNKEIFLRELVSNASDALDKIRFESLTDKSKLDAQPELFIHIIPDKTNNTLTIIDSGIGMTKADLVNNLGTIARSGTKEFMEALAAGADVSMIGQFGVGFYSAYLVAEKVIVTTKHNDDEQYVWESQAGGSFTITRDESEPLGRGTKITLYLKEDQLEYLEERRLKDLIKKHSEFISYPISLWVEKTTEKEISDDEDEEEKKDEEGKVEEVDEEKEKEEKKKKTIKEVSHEWDLMNKQKPIWMRKPEEISKEEYAAFYKSLTNDWEEHLNVKHFSVEGQLEFKAVLFVPKRAPFDLFDSKKKPNNIKLYVRRVFIMDNYSLKEKFEGLCKVIKDVLGDKVEKVVVSDRVVDSPCCLVTGEYGWTANMERIMKAQALRDASMAGYMSSKKTMEINPENSIMEELRKRADADKNDKSVKDLVLLLFETALLTSGFSLDEPNTFGNRIHRMLKLGLSIDEDAGEDADIPALEEADVDADGSKMEEVD 510
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g05187 510 Pfam Hsp90 protein 184 345 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Soca5g05187 510 Pfam Hsp90 protein 347 496 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Soca5g05187 510 SMART HKATPase-4 28 182 IPR003594 -
Soca5g05187 510 FunFam Heat shock cognate protein 3 228 - -
Soca5g05187 510 MobiDBLite consensus disorder prediction 215 248 - -
Soca5g05187 510 MobiDBLite consensus disorder prediction 488 510 - -
Soca5g05187 510 MobiDBLite consensus disorder prediction 217 238 - -
Soca5g05187 510 Gene3D - 1 228 IPR036890 -
Soca5g05187 510 SUPERFAMILY ATPase domain of HSP90 chaperone-DNA topoisomerase II-histidine kinase 6 213 IPR036890 -
Soca5g05187 510 SUPERFAMILY Ribosomal protein S5 domain 2-like 263 345 IPR020568 -
Soca5g05187 510 ProSitePatterns Heat shock hsp90 proteins family signature. 26 35 IPR019805 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0051082(InterPro)
Soca5g05187 510 PANTHER HEAT SHOCK PROTEIN 90 FAMILY MEMBER 4 344 IPR001404 GO:0005524(InterPro)|GO:0005829(PANTHER)|GO:0005886(PANTHER)|GO:0006457(InterPro)|GO:0006457(PANTHER)|GO:0016887(InterPro)|GO:0032991(PANTHER)|GO:0034605(PANTHER)|GO:0048471(PANTHER)|GO:0050821(PANTHER)|GO:0051082(InterPro)|GO:0051082(PANTHER)|GO:0140662(InterPro)
Soca5g05187 510 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 30 181 IPR003594 -
Soca5g05187 510 PIRSF HSP90-HTPG 1 347 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Soca5g05187 510 PIRSF HSP90-HTPG 343 510 IPR001404 GO:0005524(InterPro)|GO:0006457(InterPro)|GO:0016887(InterPro)|GO:0051082(InterPro)|GO:0140662(InterPro)
Soca5g05187 510 CDD HATPase-Hsp90-like 15 202 IPR020575 -
Soca5g05187 510 SUPERFAMILY HSP90 C-terminal domain 354 475 IPR037196 -
Soca5g05187 510 Coils Coil 220 257 - -
Soca5g05187 510 Gene3D - 343 486 IPR037196 -
Soca5g05187 510 PRINTS 90kDa heat shock protein signature 6 26 IPR020575 -
Soca5g05187 510 PRINTS 90kDa heat shock protein signature 170 187 IPR020575 -
Soca5g05187 510 PRINTS 90kDa heat shock protein signature 27 49 IPR020575 -
Soca5g05187 510 PRINTS 90kDa heat shock protein signature 94 111 IPR020575 -
Soca5g05187 510 PRINTS 90kDa heat shock protein signature 76 93 IPR020575 -
Soca5g05187 510 PRINTS 90kDa heat shock protein signature 119 141 IPR020575 -
Soca5g05187 510 PRINTS 90kDa heat shock protein signature 188 206 IPR020575 -
Soca5g05187 510 FunFam Heat shock protein 90 alpha 342 480 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g05187 K04079 molecular chaperone HtpG
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Event-related genes

Select Gene_1 Gene_2 Event_name
155638 Soca2g04604 Soca5g05187
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr3:5093828 Soca5g05187 Soca-Chr5:70186616 dispersed
Soca Soca-Chr5:55967158 Soca5g05187 Soca-Chr5:70186616 dispersed
Soca Soca-Chr5:70186616 Soca9g02185 Soca-Chr9:25026726 dispersed
Soca Soca-Chr2:82550107 Soca5g05187 Soca-Chr5:70186616 transposed
Soca Soca-Chr2:90492673 Soca5g05187 Soca-Chr5:70186616 wgd