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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g05242 ATGATGAGATCTCTTTCTTTAATATATATATATATATATATATATATATATATATATATATATTGGTCAATCTTTGACTTTTGTGTATGTGCAGATGGTGTTTTCGGCAGCAGCTCTGATTCTTCTTCTTCTTCATTTGGACGCGCTCTTCTTCAGGCTAAAAAACCTTGCCCAGTGAACTTTGAGTTCATGAATTACACAATCATTACCAGCCAATGCAAAGGACCACGATACCCTGCTAATCTATGTTGTCAAGCTTTTAAAGACTTCGCTTGTCCTTACTCTGATTACTTGAACGATTTGTCAAATGAGTGTTCGACTACCATGTTCAGCTACATCAATCTCTACGGTAGCTATCCACCCGGGCTTTTTGCTAGCTTGTGTCGGGATGACAAAGTTGGGCTCATCTGCCCTGCTCAAGCACCAGGATCAGGAAGAAACAGTGTCGGGGCTGATTCTAATAACAGCCATGCCCATAACATCCGCAGCCCATCTATGCTGTTAACATTAACTATGGGATTTATAATATTCTTGTTGCGATGGTTTTAA 549 39.34 MMRSLSLIYIYIYIYIYIYIYWSIFDFCVCADGVFGSSSDSSSSSFGRALLQAKKPCPVNFEFMNYTIITSQCKGPRYPANLCCQAFKDFACPYSDYLNDLSNECSTTMFSYINLYGSYPPGLFASLCRDDKVGLICPAQAPGSGRNSVGADSNNSHAHNIRSPSMLLTLTMGFIIFLLRWF 182
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g05242 182 PANTHER GPI-ANCHORED PROTEIN LLG1-RELATED-RELATED 18 179 IPR039307 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g05242 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
155643 Soca2g04626 Soca5g05242
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr2:90724314 Soca5g05242 Soca-Chr5:71161872 wgd