Gene detail

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Species

Gene ID

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Or, Query Sequence

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Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Soca5g05252	ATGAATCAAGAAACTGCACCATCAGCCACCAAAAACCTTACTATAAAAATATCAAACTCAACTCAAAAACCAAGAAAAGAAATCTTGACAAACATTGTTCAAGCAACATCACCATATAACTCACCATCTTTAATCTCACCACCATCTTCTGCCTTTGTGTCTGCACTGCAATCCCCTTATATATCTCCTAGAGCCACTCGAGATGACCCGAACCACCTGCAAGAACACGAAACAGCCACTGGTAGTACTACTACCGGTGCCACCACTCCAACTACATTTACTCACCCATCCACTCCTGTTTCGTATTGTGGTTCGGGCAACGACGATATTCCAAGTACTTCCTACACTCCCCCGTCAGAAAGGTACGATTTTTCGGATGAAACGAAGCTCAAAATCGTCAACTGTGTCCCGGTAACTTCTTCTGATACTAGTACTAATACTAATAATGCAACTGCACCTAGGATTTCATTCTCATTTCCTGTTCCGAGAATTTCATTCCAAAAAGGGTCCTTTTCGCCTGCAAATGCGAAATTAAGAAGTTGTGATGTTTATATTGGATACCACGGGCAAAACCCGAACTTGATTAGGTTCTGCAAATGGCTTAAGTCAGAGTTAGAGCTACAAGGAATTGCTTGTTTTGTTGCCGACAGAGCAAAATACTCGGATTCGCAGAGTCATGGAATTGCGGATAGAGTTATTTGTTCAGCCACATTTGGGGTTGTAGTGGTTACTAAAGAGAGTGTGTCGAGTTATTTAAGTCTAGAAGAGATTAGATTCTTTGCTCAAAAGAAGAATCTAATCCCGTTGTTCTTTGATACCGATTCAAATGAAGTTGCAAATCTTTTAGCTCAAAATGCAGACAGTAAAGAATGTAAAGAGGTGATAGACGGGTTGATGAAGGCACACGACTTTAAACCTGAAGCAAATGAGGGTAATTGGCGGTTATGTGTGTCAAAGACAGCTGGAATATTGAAGGGGAGACTTGGGAGAATGAGTGTGGCTGAAAGGGAAATAGAAAATGTCGATGAAATCCCTTATCCAAAGAACAAATTGTTTGTGGGAAGAGAAAAGGAGCTGGCGGAGATTGAAATGGCATTTTTTGGATGCGTGGACGTTGAAAATGAAGGTAATGTTAATGTTAGTAAAGGAGGGACACCAGGAACGTCAGAAGGACTTGCAGATGAAGAAAGTGAAGTTGATGGAAGTAGAAATGGGAAGTTTATAAGTTTAGAAGTTGGAAAGTGTAAGGAACCGAAGCTTGAAGCTTGGGTTGAGCCGGTTATTGGGAGAAACTCGCTGAAAAGGCCTAAATACAAGAAAACAAAGAGTGGGAAGTACAAAAGTTTTGTAAGTGGCATTGTGTGCATCAATGGAGATCCAGGAATGGGAAAAACTGAGTTGGCATTAGAGTTTGCTCATAGATATTCTCAGAGATACAAGATGGTGTTATGGGTCGGTGGGGAAGCTCGGTATTTCAGACAAAACATACTAAATTTGTCGTTGAGTCTAGGGTTAGATGTAAGCGCAGATGAAGAAAAAGAAAGAGGGAGGATCAGAAGCTTTGATGAGCAAGAAACAGAAGCTTTCAAGAGGGTAAAACGTGAACTATTTCGAGATATGCCATATCTACTGATCATCGATAATCTTGAAACAGAAAAAGATTGGTGGGAAGGGAAAGATTTACATGATTTGATACCAAGAAACACAGGTGGTTCACATGTTATTATAACAACTAGGCTCCCGAGAGTAATGAGCTTTGATCCGATGCAACTTCAGCCACTGACATTGAAAGATGCATTCTTGATAATGAAAGGAAGACGAAAGAAAGAATACCCTGCTCAAGAAGTTGAAATTCTTGGAAAATTTGATGAGAAATTGGGGAGATCGAGTTTTGGGTTGTCAGTGATTGGATCGTTACTTTCTGAACTTGCAATTACACCCTCCACCCTCTTTGAAGCCATTGATCATATCCGTTTAGATGAAGCCGTGTCTCATTTTGATGAAGTATTTTGGGGAAGCAATAAGTTTCTACTCAAAGTCTTGATCTTTTGCATTACTATTTTGCACGAAGCTAACGAGACTAGAAACATTCTTGCCTCAAAGATGCTTATGGTTGGAGCCTGGTTTGCTCCGTTACCCGTGTCAGCAAGTTTACTAGCAGCGGCTGCAACCAGCATAAGTGGTTCAAACAACCGGTTAAAGAAATGGGCCAAATGTGCAAACATGACTTTCTTTTGTTGTGCGGGGTTTCTAGAGAACCAAACTTCAAAGAGTGAAGAAGATTCAGCTCTTGTGTTAGTCAAATTAGGGCTTGCCAGAAGAGCAAATAGGCATCCCGGATGCCATATTTTGTTTCACCCCATAACTCAAATTTTCGCAAAACTTAAAGGGGGTTTACTCCCAGCAAAAGCAACGATCCAGGGCATAAGGAAAACAGGAAACCCTGTTTTAAACGCAGACCATCTTTGGGCTTCTGCTTTTCTTGTATTTGGGTTCAAATCTGAGCCACCATTAGTCCAACTAAAGGCCAACGACATGGTTTTCTTCATTAAGAAAACAGCTCTCCCTTTAGCGATACGGGCGTTTACTACATTTTCAAGGTGCAACTCATCCTTGGAGCTACTGAAAGTCTGCACAAATGTTCTTGAAGAAGTGGAAAAATCATTTGTGTCACAGATACAAGATTGGTGCCACGGATCACTTTGTTGGAAGAAAAAGATGAACTCACACCAAAGAATCGACGAATATGTATGTCAAGACGTGACCCTTTTGAAGGCTACTTTATTAGAGACAAGAGCGAAATTGTTATTAAGAGGTGGGCATTTTGACAACGGTGAAGAGCTGTGCCGGACATGTATTAGTATCAGAACAGTGATGCTTGGCCATAATCATGCACAAACTTTGGCCGCTCAAGAAACATTAGCAAAATTAGTTAGAATGAGGAGTAAGATATAG	2955	40.81	MNQETAPSATKNLTIKISNSTQKPRKEILTNIVQATSPYNSPSLISPPSSAFVSALQSPYISPRATRDDPNHLQEHETATGSTTTGATTPTTFTHPSTPVSYCGSGNDDIPSTSYTPPSERYDFSDETKLKIVNCVPVTSSDTSTNTNNATAPRISFSFPVPRISFQKGSFSPANAKLRSCDVYIGYHGQNPNLIRFCKWLKSELELQGIACFVADRAKYSDSQSHGIADRVICSATFGVVVVTKESVSSYLSLEEIRFFAQKKNLIPLFFDTDSNEVANLLAQNADSKECKEVIDGLMKAHDFKPEANEGNWRLCVSKTAGILKGRLGRMSVAEREIENVDEIPYPKNKLFVGREKELAEIEMAFFGCVDVENEGNVNVSKGGTPGTSEGLADEESEVDGSRNGKFISLEVGKCKEPKLEAWVEPVIGRNSLKRPKYKKTKSGKYKSFVSGIVCINGDPGMGKTELALEFAHRYSQRYKMVLWVGGEARYFRQNILNLSLSLGLDVSADEEKERGRIRSFDEQETEAFKRVKRELFRDMPYLLIIDNLETEKDWWEGKDLHDLIPRNTGGSHVIITTRLPRVMSFDPMQLQPLTLKDAFLIMKGRRKKEYPAQEVEILGKFDEKLGRSSFGLSVIGSLLSELAITPSTLFEAIDHIRLDEAVSHFDEVFWGSNKFLLKVLIFCITILHEANETRNILASKMLMVGAWFAPLPVSASLLAAAATSISGSNNRLKKWAKCANMTFFCCAGFLENQTSKSEEDSALVLVKLGLARRANRHPGCHILFHPITQIFAKLKGGLLPAKATIQGIRKTGNPVLNADHLWASAFLVFGFKSEPPLVQLKANDMVFFIKKTALPLAIRAFTTFSRCNSSLELLKVCTNVLEEVEKSFVSQIQDWCHGSLCWKKKMNSHQRIDEYVCQDVTLLKATLLETRAKLLLRGGHFDNGEELCRTCISIRTVMLGHNHAQTLAAQETLAKLVRMRSKI	984

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Soca5g05252	984	MobiDBLite	consensus disorder prediction	61	109	-	-
	Soca5g05252	984	FunFam	p-loop containing nucleoside triphosphate hydrolase superfamily protein	430	589	-	-
	Soca5g05252	984	ProSiteProfiles	TIR domain profile.	179	302	IPR000157	GO:0007165(InterPro)
	Soca5g05252	984	MobiDBLite	consensus disorder prediction	76	109	-	-
	Soca5g05252	984	MobiDBLite	consensus disorder prediction	378	400	-	-
	Soca5g05252	984	Gene3D	-	157	300	IPR035897	-
	Soca5g05252	984	SMART	AAA-5	450	615	IPR003593	GO:0016887(InterPro)
	Soca5g05252	984	Pfam	NB-ARC domain	452	640	IPR002182	GO:0043531(InterPro)
	Soca5g05252	984	SUPERFAMILY	Toll-Interleukin receptor TIR domain	181	282	IPR035897	-
	Soca5g05252	984	Gene3D	-	418	587	IPR027417	-
	Soca5g05252	984	PANTHER	DNA REPAIR PROTEIN RADA	174	977	-	GO:0000725(PANTHER)
	Soca5g05252	984	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	449	658	IPR027417	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Soca5g05252	-	-

Event-related genes

Select	Gene_1	Gene_2	Event_name
	155645	Soca2g04631	Soca5g05252

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Soca	Soca-Chr1:15986961	Soca5g05252	Soca-Chr5:71366731	transposed
	Soca	Soca-Chr1:17947054	Soca5g05252	Soca-Chr5:71366731	transposed
	Soca	Soca-Chr2:90784962	Soca5g05252	Soca-Chr5:71366731	wgd