AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g05257 ATGATATCCAATATTGATGATCATCATCCACCATCAGATCCTTCATCATCATCTCATCATCATCATATACAACAAAATATCTCTAATGATCTCAAGGTTTCTTATATAGATCTGAAGTCTTTAGATGCTGATCTTGATGATATCATCAACAACAACCAACTTCCTAGATTCTCTATAAGGGATTATGTATCCGGTGTAAGGAGCAAGGATATTGGCTGTAATTGGCCTTTTTCTCCAACAAGTTTGCAACTTTGCTTGAAACATGGAGTCAAGAATTTGTTGCCACCTTTCCAATCTCTTGATTCATTGAGAAATAACTCATCTTTGACTAGATGCGGTAGTCTTGAAAATCTTTTGACCGATGAAGAACTCGTAAACAGTTTAGATGGGAAGCTTCCAAATGATCAATTCAAATCAAAAGAAAAGGTACCCTTGAAGTCTATAACAACAAATTCAAGTGTTTCAAAAGGTCAAAAGTCAAAGGAGAAACCTCCATCTTCTTTTTCTCAGAAGACCGAAAATGCTTCAATTCACATTAAAAAGAGTAGATTGGTAATGAAGTTGAATTCGGGTGTTGAGCGAGTTGAAGATATTGCTCCAAACAGTTTCATTGTCTCTGAAACCATGGCTTCAAAAGTTTGTCCAGTTTGCAAGATCTTTTCATCATCTTCAAACACGACACTAAACGCTCACATTGACCAGTGTTTGACTGGTGAGGGGACCATGAAATGGACCGAGAATCCCAAGGTTATAGTCAAATATAAAGTCAAGCCTAGGAAGATGAGGTTGATGGCGGATATATACAAAACAGCTCGACATTGTACAATAGAGGAACTCGATAGAAGAAATGGTACAAGTTGGGCTACAAATTCGAGTTTTCCCGATCAAGAGTGCCAGTTTCAAGGAGAAGAAGAAGAAGAAGAGAAAGAAGAAGATGAAGAAGAGAAAGAAAAAGAGGAAGAAGAGAGAGAAGATCAAAGAACTGCTACGCTTAATCCTGAAGAAGAGAAAAGAGAGCGAAAAACGACTAATATTACTATTTCTAAAGTTGCTAATAATGAAGGTGATGTGTATATTGACACCAATGGCACTAAATTTAGGATCTTATCAGTGCCAAAAGCCGGTTCCTCGGATAATAATCGAGCTCGGAAGTTAGTAAAGGGGGTAAAAGGGAGTAAAGTTATGATGGGCAAGAAGAAAAACAGTATTTATAAGCAGAAACATAAACAAAAGCATTCCAAAGTTATTCGTAATGCCCAAAAGTTATGCTCACCGAAGCCTCAGGCAAGAAGTGGACAAGGAGAGGCTGTTGCCATGGCCGAAAATCGCAGAAAAGATAAACGTGACAGAGAGCCCATGAAATTGGCTGACTTGGCTATTACAAGGCCACCATGGGCGTGCTCTAAGCGAACCGGTCTGTTGAAAAAGTTCAGTGGCAAGAATCAAAGAGTGGGATCACAATCTCATGAAATGAAAGATTTGCTTGTTGAAAGTGACAAGTCTTTTTCAGAATGTGATTTGGGAACTCCTCGAAGCTCATTTGATAAGGTGCCTTATTCTCAAATTAGGAAGAAATTGAGAAGTTCATCATCGTTAACTAAGCAGTCTCTAAGGACTAATAAGATAGTGGAGTTCAGAAAGGAAGACACCTGTATGCACGGTGATGACGATGATGTTGATGATGACGACAATGAAGACAACTATGACGATTGTGGTTCCCCAGATGCAAGTCGATCACAACATTCTGATGGGGCTGATACTAGATCAATGGATAAGAAGATGCAATATTTGGCCAAGAATCTTTCATTCCCAGCTGCCGAGATCAATTTGAAAAGAAAGTTTACAGCTTTGGGGAAGTCTCGTGTCTGTGACTTATTGAACGACATATCTGCTGATGGGCCATCTCAAGATTCTTTAGAAGAGCAATCTAAAATGGAAGAGCATCCGGCTTCAAAAAGTTCAAATGAAGAATCTTCTGAGGGGATTCAAAGTGTCAGTGGGGATGAATTAGAATCTGTTAGAAATGAGACGTTATTATCCAATGTTGATCAAGTTTGTATTCTTCCAGCCCCGAGTTTTATGGATTTGAGCAGCTCTTTCAATTCAGAGTTTTCAAAACAGGAGTGCATTGGGCTGTATCAAGATCAGTTATGTTCAACTAACCGTGCTCCAGATGATGTTGAGAAACAAGAAAACTACTTTCAAGAGGTCGATCCCATACCTATTCCCGGACCACCCGGATCATTCTTGCCCGCCAGCCCCGGTGGGGAAATGGTTTCTGAGGAACATATTCAAACAAATAGAGTTCTGTCAAGTGAAAATCAACATCATCATGATACCATGGATAATGATTCCATGTCCAATTCTCCGGTTTCAACTGTCTCTAATCCAAGATCTACATCTGTGCAAGATGATGCATTTAAAAGATCCTTTGTTAATGGTGATATGGGATTCACAGAAAGGGGTTTATCTCATAACAGTTTCAAGAATGATCAGCCTTGTTGTTGCTCAAGAAAGGAGGTTGCTTTCAATTATCAAGATTCGTGTATTTCAAGGAAACAACCGGTTGAACCTAACATGAGCATTCCAAGAGCTTTTAACTTCAAATCTGAGATGTTTCCACCGCCAAGCAACTATCCGGCGTTACCAGCACCTGATTCTTCTGTTAGCCCTTCGAAACCAGTTCTGAGGTTAATGGGAAAAAATTTAACCGTGGTTAAGACAGATGAAGATGAATATAGACCCCCTCAATCAAGTCAACAACATCCACAATTACCTGTGATCTTTAGCCAGAAGTACCAGAATGGGTTTGAATATCAAGATTTCAATGTTCATCCATCGAGTCATACGAGAAGTCATGTTGACTTGAAGCCTATTCATGGTGGTTTCATGGAACCTGTGGATCGTTATGATCATGGTGGTCCTTACCTTCAGCCAAGGTATAACATTCTTGATTATCAAACCATAAGTGGAAGTAATGTTTATAATGTTACTTCCAGTTCCAAATCCGTTGAGGAGATCATCATCATTGATGATTTCCCTGAAATTAAAGCTGATGATTCTAGGAGAAATGAGTTTCTGAAAAAGAATCAGAGACAAATGAACCCATCACAAAGATCTACTCATCCATATGGTGGTGGTGATTCAACGGTGTTTCGTGATGGTGGTTTTCAAAACCGGACTAATGGAGATCTTGGCAAGTGGAATATACGATCCGGTCAATCATCATCATTATCGCCTTCAATGGCTCATTTGCGATCTTCATCAACCACATACTATCCTCCTAGCCATCCTTGA 3297 39.4 MISNIDDHHPPSDPSSSSHHHHIQQNISNDLKVSYIDLKSLDADLDDIINNNQLPRFSIRDYVSGVRSKDIGCNWPFSPTSLQLCLKHGVKNLLPPFQSLDSLRNNSSLTRCGSLENLLTDEELVNSLDGKLPNDQFKSKEKVPLKSITTNSSVSKGQKSKEKPPSSFSQKTENASIHIKKSRLVMKLNSGVERVEDIAPNSFIVSETMASKVCPVCKIFSSSSNTTLNAHIDQCLTGEGTMKWTENPKVIVKYKVKPRKMRLMADIYKTARHCTIEELDRRNGTSWATNSSFPDQECQFQGEEEEEEKEEDEEEKEKEEEEREDQRTATLNPEEEKRERKTTNITISKVANNEGDVYIDTNGTKFRILSVPKAGSSDNNRARKLVKGVKGSKVMMGKKKNSIYKQKHKQKHSKVIRNAQKLCSPKPQARSGQGEAVAMAENRRKDKRDREPMKLADLAITRPPWACSKRTGLLKKFSGKNQRVGSQSHEMKDLLVESDKSFSECDLGTPRSSFDKVPYSQIRKKLRSSSSLTKQSLRTNKIVEFRKEDTCMHGDDDDVDDDDNEDNYDDCGSPDASRSQHSDGADTRSMDKKMQYLAKNLSFPAAEINLKRKFTALGKSRVCDLLNDISADGPSQDSLEEQSKMEEHPASKSSNEESSEGIQSVSGDELESVRNETLLSNVDQVCILPAPSFMDLSSSFNSEFSKQECIGLYQDQLCSTNRAPDDVEKQENYFQEVDPIPIPGPPGSFLPASPGGEMVSEEHIQTNRVLSSENQHHHDTMDNDSMSNSPVSTVSNPRSTSVQDDAFKRSFVNGDMGFTERGLSHNSFKNDQPCCCSRKEVAFNYQDSCISRKQPVEPNMSIPRAFNFKSEMFPPPSNYPALPAPDSSVSPSKPVLRLMGKNLTVVKTDEDEYRPPQSSQQHPQLPVIFSQKYQNGFEYQDFNVHPSSHTRSHVDLKPIHGGFMEPVDRYDHGGPYLQPRYNILDYQTISGSNVYNVTSSSKSVEEIIIIDDFPEIKADDSRRNEFLKKNQRQMNPSQRSTHPYGGGDSTVFRDGGFQNRTNGDLGKWNIRSGQSSSLSPSMAHLRSSSTTYYPPSHP 1098
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g05257 1098 MobiDBLite consensus disorder prediction 1028 1098 - -
Soca5g05257 1098 PANTHER HAPLESS PROTEIN 7 1096 - -
Soca5g05257 1098 MobiDBLite consensus disorder prediction 1054 1098 - -
Soca5g05257 1098 Gene3D Classic Zinc Finger 213 238 - -
Soca5g05257 1098 MobiDBLite consensus disorder prediction 554 570 - -
Soca5g05257 1098 MobiDBLite consensus disorder prediction 283 343 - -
Soca5g05257 1098 MobiDBLite consensus disorder prediction 424 452 - -
Soca5g05257 1098 MobiDBLite consensus disorder prediction 148 174 - -
Soca5g05257 1098 MobiDBLite consensus disorder prediction 321 343 - -
Soca5g05257 1098 MobiDBLite consensus disorder prediction 633 670 - -
Soca5g05257 1098 MobiDBLite consensus disorder prediction 283 298 - -
Soca5g05257 1098 MobiDBLite consensus disorder prediction 1030 1045 - -
Soca5g05257 1098 MobiDBLite consensus disorder prediction 1 24 - -
Soca5g05257 1098 Coils Coil 300 329 - -
Soca5g05257 1098 MobiDBLite consensus disorder prediction 771 803 - -
Soca5g05257 1098 MobiDBLite consensus disorder prediction 551 589 - -
Soca5g05257 1098 MobiDBLite consensus disorder prediction 655 670 - -
Soca5g05257 1098 MobiDBLite consensus disorder prediction 299 320 - -
Soca5g05257 1098 MobiDBLite consensus disorder prediction 639 654 - -
Soca5g05257 1098 MobiDBLite consensus disorder prediction 784 803 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g05257 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
155646 Soca2g04632 Soca5g05257
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr2:90793103 Soca5g05257 Soca-Chr5:71440141 wgd