AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g05266 ATGTTGCTTGGAATCTACCTTCTGCTGCCCGGAACACTTAAGGTTCTTAAGCTTGAGCCAGCTAGTGCATTGGATACTATAGTTTTCTTTAGGACCTTTACATACACCACTACGGAGGTTCCAGTTGGTCTTACGACATTTGGACAGGCATTGACACACATATCATTAGTTTTGGATATCATTAGTGACTCCCTTGTCCGCACTATTGTACACGGTCTTCCTCTACTGTCAGAGTTGGATCTTAAAGACCGGCCAACATCTGAACCAGCTGACGACCTATCTGACTTCGGGGTTCAATCGCTAGCTGGTTGTACGCATCTAACTAGCCTGTCTCTTATACGAAGCCGACAACATATTGCTACCTCGTTCAAAAGGGTTACTGATATGGGTATGTTTTTACTTTCGGAGGGTTGCAAAGGACTAGAATCAGTTCGACTTGGTGGGTTTTCTAAAGTTAGTGATGCGGGGTTTGCATCAGTTTTCAATTCATGTTTGAATTTAAAAAGTTTGAAATTCAAAATGCTTCCTTTTTGA 534 42.13 MLLGIYLLLPGTLKVLKLEPASALDTIVFFRTFTYTTTEVPVGLTTFGQALTHISLVLDIISDSLVRTIVHGLPLLSELDLKDRPTSEPADDLSDFGVQSLAGCTHLTSLSLIRSRQHIATSFKRVTDMGMFLLSEGCKGLESVRLGGFSKVSDAGFASVFNSCLNLKSLKFKMLPF 177
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g05266 177 SUPERFAMILY RNI-like 50 172 - -
Soca5g05266 177 Gene3D Ribonuclease Inhibitor 10 176 IPR032675 -
Soca5g05266 177 PANTHER UNCHARACTERIZED 44 173 - GO:0019005(PANTHER)|GO:0031146(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g05266 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr5:71600840 Soca5g05268 Soca-Chr5:71613648 proximal
Soca Soca-Chr5:71600840 Soca5g05266 Soca-Chr5:71600840 tandem