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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g05277 ATGGATAGTATGACGGTGTTTTGTTCAAAACCCCATTACTTTCATCATTCCCAAATAAAAGGGTATCATCATTCCAATATTCAAAAATCACCACTCTCTTTCTTTAATTCCAAAACCCTTATTAATTTTAACAGCTCAAAATCATCTTTGTTTGCCGCCAAAAAAACAAGTGTTGTTGTTTCAAATCTTGATTCTAGAGTTAATGGTGCTCTTTCATCTGACCCAGATTCTAGTTTTCTTGATAGACAAAAAGCATTGGAAGCTGCAATGAATGATATTAACAACTCATTTGGTAAAGGAAGTGTGACAAGGCTAGGAAGTCTTGGTGGAGCTCTTGTTGAAACATTCCCGAGTGGTTGTCTCCCCTTAGACCTTGCATTAGGTGGTGGCCTGCCTAAAGGGAGAATCGTAGAGATTTATGGACCAGAAAGTAGTGGAAAGACCACCTTGGCGCTACATGCCATTGCAGAAGTTCAGAAGCTAGGAGGAAATGCAATGCTTGTTGACGCAGAGCATGCGTTTGATCCATCATATTCTAAAGCATTAGGAGTGGACGTGGAGAATTTAATTGTTTGCCAACCCGATAATGGAGAAATGGCACTTGAGATTGCAGACCGTATGTGTAGATCGGGTGCGGTTGATCTCATCTGCATCGACTCTGTCTCAGCTCTTACTCCACGAGCTGAGATTGAAGGTGAAATTGGAATGCAACAAATGGGTTTGCAAGCACGTCTTATGAGTCAAGCATTGCGTAAGATGTCAGGCAATGCATCTAAAGCTGGCTGTACTCTTATTTTTCTTAATCAAATAAGATACAAGATAGGAGTATATTATGGAAATCCAGAAGTTACAAGTGGAGGTATTGCCTTAAAATTTTTTGCATCTGTTCGACTTGAAATACGGCCTATTGGGAAGATAAAATCGGTCAAAGGTGACGAGGATATTGGACTTAAGGTTCGAGTAAGAGTTCAAAAGAGTAAGGTTTCTAGACCATACAAACAAGCAGAGTTTGAAATCATTTTCGGAGAGGGAGCAAGCAAATTGGGATGTGTATTGGATTGTGCTGAAATGATGGACATTGTGTTGAAGAAGGGATCTTGGTATAGCTATCAAGATCAAAGGTTGGGGCAAGGAAGAGACAGGGCATTGCAATACTTGAGAGAAAACCTCCCCCTTTGTGACGAAATAGAAAAGCTTGTCAGGTCGGCAATGATGGATGGAACTGGGCAAGCAATTACTTCTTACGCTCGACACCCAACACCACTGAATGAAGAGGATGAGTTACTTGAAGAAATTCAGTGA 1302 40.71 MDSMTVFCSKPHYFHHSQIKGYHHSNIQKSPLSFFNSKTLINFNSSKSSLFAAKKTSVVVSNLDSRVNGALSSDPDSSFLDRQKALEAAMNDINNSFGKGSVTRLGSLGGALVETFPSGCLPLDLALGGGLPKGRIVEIYGPESSGKTTLALHAIAEVQKLGGNAMLVDAEHAFDPSYSKALGVDVENLIVCQPDNGEMALEIADRMCRSGAVDLICIDSVSALTPRAEIEGEIGMQQMGLQARLMSQALRKMSGNASKAGCTLIFLNQIRYKIGVYYGNPEVTSGGIALKFFASVRLEIRPIGKIKSVKGDEDIGLKVRVRVQKSKVSRPYKQAEFEIIFGEGASKLGCVLDCAEMMDIVLKKGSWYSYQDQRLGQGRDRALQYLRENLPLCDEIEKLVRSAMMDGTGQAITSYARHPTPLNEEDELLEEIQ 433
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g05277 433 FunFam DNA repair protein recA 1 like 111 406 - -
Soca5g05277 433 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 82 344 IPR027417 -
Soca5g05277 433 CDD RecA 113 347 - -
Soca5g05277 433 Hamap Protein RecA [recA]. 82 407 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Soca5g05277 433 ProSiteProfiles RecA family profile 2. 275 350 IPR020587 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006259(InterPro)|GO:0008094(InterPro)
Soca5g05277 433 Gene3D - 111 407 IPR027417 -
Soca5g05277 433 SMART AAA-5 133 304 IPR003593 GO:0016887(InterPro)
Soca5g05277 433 PRINTS RecA protein signature 286 314 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Soca5g05277 433 PRINTS RecA protein signature 169 198 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Soca5g05277 433 PRINTS RecA protein signature 321 350 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Soca5g05277 433 PRINTS RecA protein signature 241 270 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Soca5g05277 433 PRINTS RecA protein signature 375 392 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Soca5g05277 433 PRINTS RecA protein signature 203 232 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Soca5g05277 433 Pfam RecA C-terminal domain 349 404 IPR049261 -
Soca5g05277 433 ProSitePatterns recA signature. 289 297 IPR020584 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006259(InterPro)|GO:0008094(InterPro)
Soca5g05277 433 ProSiteProfiles RecA family profile 1. 112 270 IPR020588 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)|GO:0140664(InterPro)
Soca5g05277 433 Pfam recA bacterial DNA recombination protein 84 345 IPR049428 -
Soca5g05277 433 SUPERFAMILY RecA protein, C-terminal domain 346 402 IPR023400 -
Soca5g05277 433 NCBIfam recombinase RecA 81 401 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
Soca5g05277 433 PANTHER RECA 65 411 IPR013765 GO:0003697(InterPro)|GO:0005524(InterPro)|GO:0006281(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g05277 K03553 recombination protein RecA
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr5:11947204 Soca5g05277 Soca-Chr5:71735431 dispersed
Soca Soca-Chr5:71735431 Soca6g02085 Soca-Chr6:28126634 dispersed