AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g05318 ATGGCTGGCAATGGCCTGCCAAATTTAGGCCGTGTGAAACTCACAGACCTGATAGCTTCCGAAGGACTTCCATCTGACACATACAAACTATCGGTTTCAACTCTGTCACAATCTTTTGCTCAATATTCCGCTGCCATTATCCAGTTACCATTGAGTGATAGTGCTCTGTTGAGGTGTTGCCTAGATTCTGCTCGACCATACTTTAATCAAAAACCCGCATATCCATCTGCTGATATGATTCATATTAATGACTCCCGTGAATGGTGCAAGACCTCTGGATACTCTGCAGATCCGCAACTGTGGCAAGAAAGTTATGAATACAGACCGGGACTAACTTTGATTGAACCCAACAATGGTATTGATATGCCACCCGTTGGGTTGGCTGATATATTTGTATTACTCGGAAAAGCTGCTCGAGATATATTGGATTCCATCAGCTTTTATTTGAATCTACGTAGCTGTGCTTTCACCGAAATACTTGATAGTGTTCCCTTGAGAAATAGGGAAATTTCATCTTCGGTTTTGTCTGTTGGTTGTCATGCAAGGCCTTCTTTTCAGGGAGCTCAACATCACAACATCACAACCCAAGAAGACGGGCAGCTAGTTATGTTTTCAGACCATGAGCATCAAGTCGATAAAAGCCTTATATCTCTTATGAAGTCAGATAAACCAGGCCTTCACATTAGAGATTTCAATGGTCGTTGGGTGCTTGTGGATGGTGATCTTGGTCCCCAAGAAGCAGTTGTGTACCCTGGACTTGCTTTGTACCATGCTACTGCTGGTTATGTTAGCCCTGCACTGCATAGAACGGATATTAGCAATTTACATGGTAACATGTACGGGCGATGCTCACTTTCTTTCAAGCTTATGCCAAAATCCATGACTAATCTTAACTGTTCAGAGATGCGAGCTGCTGGTCATGGTGTAGAAGCTCAGTTTCAGCTACCAGTTTCAGTTGATGACTTCATGCAGCGACCACACTCCCTGGATCAACTCTTTAACCGAAACAATTTCCCTACTTTCAGTTTTCCCACAGCCCAAGAAGGTCCTTAG 1053 43.49 MAGNGLPNLGRVKLTDLIASEGLPSDTYKLSVSTLSQSFAQYSAAIIQLPLSDSALLRCCLDSARPYFNQKPAYPSADMIHINDSREWCKTSGYSADPQLWQESYEYRPGLTLIEPNNGIDMPPVGLADIFVLLGKAARDILDSISFYLNLRSCAFTEILDSVPLRNREISSSVLSVGCHARPSFQGAQHHNITTQEDGQLVMFSDHEHQVDKSLISLMKSDKPGLHIRDFNGRWVLVDGDLGPQEAVVYPGLALYHATAGYVSPALHRTDISNLHGNMYGRCSLSFKLMPKSMTNLNCSEMRAAGHGVEAQFQLPVSVDDFMQRPHSLDQLFNRNNFPTFSFPTAQEGP 350
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g05318 350 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 3 348 - -
Soca5g05318 350 SUPERFAMILY Clavaminate synthase-like 132 301 - -
Soca5g05318 350 Gene3D - 24 328 IPR027443 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g05318 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr5:73070711 Soca5g05318 Soca-Chr5:73070711 tandem