Gene detail

Gene Search

Species

Gene ID

Example:

Or, Query Sequence

Example:

Gene details

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Soca5g05360	ATGTGTAGCAAAGTCATCCAACCAAGTTCACTAGTGGTGGTTTTTGAAACATTATTATCGTCTGCCGCGACTATTGTGGACGATGAGAAGGGGAACCCTTCCTGGCAAGCCCGTGCTGATTTCTACATAACTTGTATTCTTTCCTGCCTTCCATGGGGTGGATCTGAACTTGGCGAGCAAATTCCTGAAGAGATTGAAAGAGTTATGGTGGGGATAGAAGCTTATTTAAGTATCAGAAGACATGTTTCTGATGTTGGTCTATCTGTGTTTGAGAATATGAACAAAAGTGACAAACTTCACGTTGAAAAGGATTTTGTGGAAGACTTATGGGGTCGAATTCAAGATCTATCCAAGAACAGCTGGAAACTTGAGAGTGTTCCAAGGCCACATCTATTGTATGAAGCACAACTAGTAGCTGGGAAGTCTCATGATTTTGGACCCATAAGCTGCCCCGAGCATCCAGATGCCCCTGAAGAACTTTCTGAAATCAGTTTTGGTAGACAAAAACATGAAGCAGAGTTGAAATATCCTCAGAGGATACGTAGGCTTAATATATTTTCTGCTAGCAAAACCGAGGATCTGCAACCTATAGACCGCTTTGTTGTTGAAGAGTATTTATTGGATGTGCTCTTTTTCTTAAACGGATGTCGAAAGGAATGTGCCGCATGCATGGTTGGTCTCCCTGTCCCTTTCAGATATGAGTATCTCATGGCCGAGACAATTTTTTCTCAGCTGCTTTTATTGCCCCAGCCACCATTCAAGCCCATATATTACACGCTCGTCATAATAGACCTTTGCAAGTCCCTTCCAGGTGCCTTCCCTGCAGTTGTAGCTGGGGCTGTCCGTGCTCTTTTTGATAGAATAAGTGAGTTAGATATGGAATGTAGGACTCGCCTCATTCTTTGGTTCTCTCACCATTTATCAAACTTTCAGTTCATCTGGCCATGGGAAGAATGGGCTTATGTCTTGGAGCTTCCAAAATGGGCCCCGCAACGGGTATTTGTCCAGGAGGTCCTGGATAGAGAAGTCCGTCTATCTTATTGGGATAAAGTGAAGCAGAGCATTGAAAGCACTCCAGCTTTAGAGGAGTTGCTTCCTCCAAAAGGAGGGCCAGACTTCAGATACGGTTCAGAAGATGATGATAAAACTGAATATGCGCTTTCGGTAGAACTTAATGGTATGGTGAAAGGAAGAAAAACAGCACGTGATGTTATCATCTGGTTGGAAGATAGTGTAATCCCAGTCAATGGACTAGATGTTGCTCTCAGAGTTGTTGTTCATACCCTTCTGGACATTGGATCAAAGAGTTTTACTCATCTGATTACCGTGTTAGAGAGATATGGACAAGTTATTGCTAAAATTTGTCCAAGTGAAGAAACACATATTATGTTAATAGAGGAAGTCAGTTCATTTTGGAAAAATAGTGCTCAGACTACTGCCATAACAATTGACAGAATGATGGGTTATCGGCTAATTTCCAATTTAGCTATTGTTAAATGGGTCTTCTCCTCACCAAACATCAAACTGTTTCACACGAGTGATCGTTTGTGGGAGATTCTCAGAAATGCGCTTAATAAGACATACAACCGTATTTCGGATCTGAGGAAAGAGATAAATAACTTAAAAAAGAGTGTTACAAAAGCCGAGGAAAGTGTGGCCAGGGCCAAAGCTGAGTTGGATGCTGCCGAATCAAAGCTTATGCTTGTTGACGGTGAGCCTGTTGTTGGTGAGAATCCTGCTAAGATGAAACGCTTGAATTCAAATGTTGAAAAGGCAAGAGATGAGGAAGTGTCTATCCGTGAGTCTTTAGAGTCAAAGGAAGCTCTTTTTGCACGTGCCCTTGAAGAAAATAAGGCCTTGTTCCTCTCACTATACAAAAATTTCTCCAATGTTTTGATGGAACGCCTCCATGAGACATTCGGAGAGAGAGGCTTGGAGCCGACTGCTGATTTAGAAGCAATGGCAGTGGATGAAGAAGATACACTTGCAATGGATATGGATAAAGAAAATGGTAGTTCCAAAAGTGGATATACCATCGGAGAGAAAGAACAATGGTGTTTGTCAACTTTGGCATATCTCAAGGCTTTTTCAAGACAATATGCTTCTGAGATATGGCCTCACATGGATACGTTAGAGGAGGAAGTGCTAACCGAAAGTGTCCATCCTTTATTCAGAAAAGCTGTTTATTCTGGTTTGCGTCTACAGCACACAAATCAATGA	2220	41.98	MCSKVIQPSSLVVVFETLLSSAATIVDDEKGNPSWQARADFYITCILSCLPWGGSELGEQIPEEIERVMVGIEAYLSIRRHVSDVGLSVFENMNKSDKLHVEKDFVEDLWGRIQDLSKNSWKLESVPRPHLLYEAQLVAGKSHDFGPISCPEHPDAPEELSEISFGRQKHEAELKYPQRIRRLNIFSASKTEDLQPIDRFVVEEYLLDVLFFLNGCRKECAACMVGLPVPFRYEYLMAETIFSQLLLLPQPPFKPIYYTLVIIDLCKSLPGAFPAVVAGAVRALFDRISELDMECRTRLILWFSHHLSNFQFIWPWEEWAYVLELPKWAPQRVFVQEVLDREVRLSYWDKVKQSIESTPALEELLPPKGGPDFRYGSEDDDKTEYALSVELNGMVKGRKTARDVIIWLEDSVIPVNGLDVALRVVVHTLLDIGSKSFTHLITVLERYGQVIAKICPSEETHIMLIEEVSSFWKNSAQTTAITIDRMMGYRLISNLAIVKWVFSSPNIKLFHTSDRLWEILRNALNKTYNRISDLRKEINNLKKSVTKAEESVARAKAELDAAESKLMLVDGEPVVGENPAKMKRLNSNVEKARDEEVSIRESLESKEALFARALEENKALFLSLYKNFSNVLMERLHETFGERGLEPTADLEAMAVDEEDTLAMDMDKENGSSKSGYTIGEKEQWCLSTLAYLKAFSRQYASEIWPHMDTLEEEVLTESVHPLFRKAVYSGLRLQHTNQ	739

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Soca5g05360	739	Gene3D	-	377	730	-	-
	Soca5g05360	739	Pfam	MIF4G like	231	355	IPR015172	GO:0016070(InterPro)
	Soca5g05360	739	Pfam	MIF4G domain	2	112	IPR003890	GO:0003723(InterPro)\|GO:0005515(InterPro)
	Soca5g05360	739	PANTHER	CAP BINDING PROTEIN	1	733	IPR027159	GO:0000184(PANTHER)\|GO:0000339(InterPro)\|GO:0000339(PANTHER)\|GO:0003729(PANTHER)\|GO:0005634(PANTHER)\|GO:0005845(PANTHER)\|GO:0005846(InterPro)\|GO:0005846(PANTHER)\|GO:0006406(InterPro)
	Soca5g05360	739	Gene3D	-	183	369	-	-
	Soca5g05360	739	SUPERFAMILY	ARM repeat	370	728	IPR016024	-
	Soca5g05360	739	Coils	Coil	524	572	-	-
	Soca5g05360	739	FunFam	Nuclear cap-binding protein	184	369	-	-
	Soca5g05360	739	SUPERFAMILY	ARM repeat	1	184	IPR016024	-
	Soca5g05360	739	Coils	Coil	582	602	-	-
	Soca5g05360	739	SUPERFAMILY	ARM repeat	182	366	IPR016024	-
	Soca5g05360	739	Pfam	MIF4G like	413	703	IPR015174	GO:0016070(InterPro)
	Soca5g05360	739	Gene3D	-	1	158	-	-

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Soca5g05360	K12882	nuclear cap-binding protein subunit 1

Duplication type information

Select	Gene1	Location1	Gene2	Location2	Duplicated-type
	Soca	Soca-Chr5:73785344	Soca5g05360	Soca-Chr5:73785344	tandem