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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Soca5g05361 ATGGACCCAATTAACCATTTTGGGTTCTCTTACAACAATACTCATCACCACCTACCGATTCGCAGGTTTTCACAGGCAGCTCGTGTCGAAGAACAACACCAGTTCCTGTCAGATGATCACTCATCATGGCAGTTCCTGCAGCACCTTGATGATGAAACTTATCCTTCTGATACAACAGCTTCTGTAGATACCATGGAGTACCAATTCGTTGATACATTCTTCAACAACGATCATTATCATAGTAACATAAGTGGTGATTCTTTATCTTCACCTGATGAGAACAACCTGCAGCCATTTGATTCATTCTTGAATGATGTTGATTTGGACTTTGACATTGACATTGACCTTGACACTTTCTTGATGCCTGATGAGAAGACAGATGTTCCTATAATGATCCAAGAGGAAGAACAGGATCAGGGTCAAACGAGGGTGAATGGGGTTGATGATGGGCTTCAACTGGTACACTTGCTATTGGCGTGTGCAGAGGCTGTGGGTTGCAGGGACACCCAGTTAGCCGATTCAATTCTCTCCCAAATTTGGTACTCAGCCAACCCTCTAGGTGATTCTTTGCAACGAGTATCATATTGTTTTGCCATGGGGTTAAAAGCAAGATTGACCCTTTTGCAAACAAACATCAATGCAAACGGTACCGTTTGGGGAGGAGTGACCCTTGAAACAGAGGTCACCAGGGAAGAAAGGATTGAAGCTTTTCACCTACTGCATAAAACCACACCATACATTGAATTTGGATTCATGGCTGCAAATGAGGCTATATTTCAAGCAGCCCAGGGGAAGGACCGGTTGCACATTATTGATTTGGGCATGGAACACACACTGCAGTGGCCATCCCTAATAAGGACCCTAGCTTCAACTACGGGTCAAAAAGTCTTGCCAAAACTGATCAGGATCACCGGGATTTTAGGAGATCGGGGTGACGTGATGGAGCTGGAAACCGCCATGGAATCCGTGGTGGCTGAAGCTAATTCTCTTGGAATTGAACTAGCGTTCAACCTGATTGCCGGACCGGCAACCCCAGAAATGTTAACAAGAGAAAACTTAAGATTGAAAGAAGGAGAACTGTTGATAGTAAACAGCATGCTTCACTTGCATACATATGTTAAGGAAAGCAGGGGATCACTAAAAACGATACTCCAGTCGATCAAGAAGCTAGGACCTACATTGCTAACAGTAGCGGAACAAGACGCAAACCATAACGGGCCGTTTTTCCTCGGGCGGTTTCTAGAATCGTTACATTACTACTCGGCTATATTTGATTCACTGGAGGCTAGTATGGGGAGAAACAGCATTGAAAGGATGAAGATAGAAAGAAACCACTTTGCAGAGGAGATAAGGAACATAGTGGCATATGAGGGAACCGAGAGAGTGGAGCGGCATGAGAGGGCGGATCAATGGCGGCGGCAGTTAGGGAGAGCAGGATTTCAGGTGGTGGCTGGAAAAAAAGACCGGCAAGAAACTGTGATCAAGGGTTTGAACAGTAGTGATGGATATACTTCTGGGATTGATCAGAAAGGGTATGCATTGCTCGGCTGGAAAGGGAGACCCATCATGCTTGCCGCCGCTTGGCAACCTAGCTCTCCGGCCGCCTCCTAG 1611 45.81 MDPINHFGFSYNNTHHHLPIRRFSQAARVEEQHQFLSDDHSSWQFLQHLDDETYPSDTTASVDTMEYQFVDTFFNNDHYHSNISGDSLSSPDENNLQPFDSFLNDVDLDFDIDIDLDTFLMPDEKTDVPIMIQEEEQDQGQTRVNGVDDGLQLVHLLLACAEAVGCRDTQLADSILSQIWYSANPLGDSLQRVSYCFAMGLKARLTLLQTNINANGTVWGGVTLETEVTREERIEAFHLLHKTTPYIEFGFMAANEAIFQAAQGKDRLHIIDLGMEHTLQWPSLIRTLASTTGQKVLPKLIRITGILGDRGDVMELETAMESVVAEANSLGIELAFNLIAGPATPEMLTRENLRLKEGELLIVNSMLHLHTYVKESRGSLKTILQSIKKLGPTLLTVAEQDANHNGPFFLGRFLESLHYYSAIFDSLEASMGRNSIERMKIERNHFAEEIRNIVAYEGTERVERHERADQWRRQLGRAGFQVVAGKKDRQETVIKGLNSSDGYTSGIDQKGYALLGWKGRPIMLAAAWQPSSPAAS 536
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Soca5g05361 536 Pfam GRAS domain family 153 529 IPR005202 -
Soca5g05361 536 ProSiteProfiles GRAS family profile. 144 529 IPR005202 -
Soca5g05361 536 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 136 528 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Soca5g05361 K27752 GRAS family protein RAD1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Soca Soca-Chr4:58827241 Soca5g05361 Soca-Chr5:73797165 dispersed
Soca Soca-Chr5:73797165 Soca7g00368 Soca-Chr7:6018658 dispersed
Soca Soca-Chr5:73797165 Soca7g04484 Soca-Chr7:72993905 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Soca2g06319 ACH 87 555 GRAS Transcription Factor family AT4G00150 44.542 1.98e-137 412.0
Soca8g02339 . 1 481 GRAS Transcription Factor family AT1G50420 60.707 0.0 588.0
Soca1g06927 . 278 358 GRAS Transcription Factor family AT4G17230 56.79 1.74e-22 96.7
Soca1g06940 . 249 356 GRAS Transcription Factor family AT4G17230 60.185 5.45e-38 133.0
Soca1g06941 . 232 356 GRAS Transcription Factor family AT4G17230 62.4 1.93e-50 166.0
Soca3g00980 . 86 767 GRAS Transcription Factor family AT1G07530 47.145 0.0 572.0
Soca3g00527 ACH 31 640 GRAS Transcription Factor family AT5G52510 40.491 5.74e-120 368.0
Soca9g01996 . 11 530 GRAS Transcription Factor family AT1G14920 57.857 0.0 627.0
Soca1g03049 . 44 582 GRAS Transcription Factor family AT2G01570 63.834 0.0 690.0
Socaptg000040l_1g00007 . 149 593 GRAS Transcription Factor family AT1G21450 64.018 0.0 582.0
Socaptg000040l_1g00037 . 149 593 GRAS Transcription Factor family AT1G21450 64.018 0.0 582.0
Soca7g05046 ACH 1 510 GRAS Transcription Factor family AT3G13840 47.026 6.96e-152 444.0
Soca7g04484 . 154 516 GRAS Transcription Factor family AT5G17490 36.528 2.37e-68 228.0
Soca8g04137 . 276 650 GRAS Transcription Factor family AT3G54220 55.556 4.70e-145 429.0
Soca2g06036 . 141 530 GRAS Transcription Factor family AT4G37650 55.112 4.36e-144 419.0
Soca1g04503 . 1 714 GRAS Transcription Factor family AT2G37650 43.767 0.0 555.0
Soca1g04506 . 91 714 GRAS Transcription Factor family AT2G37650 45.719 2.16e-180 527.0
Soca5g05077 . 157 597 GRAS Transcription Factor family AT1G50600 60.987 0.0 547.0
Soca1g05103 ACH 35 640 GRAS Transcription Factor family AT5G52510 43.277 9.05e-135 407.0
Soca1g06966 . 152 358 GRAS Transcription Factor family AT4G17230 41.546 3.12e-40 142.0
Soca1g06968 . 264 332 GRAS Transcription Factor family AT4G17230 62.319 6.38e-25 98.2
Soca1g06969 . 153 244 GRAS Transcription Factor family AT4G17230 50.0 1.37e-25 97.4
Soca1g07002 . 177 358 GRAS Transcription Factor family AT4G17230 42.857 1.79e-37 138.0
Soca1g07003 . 260 346 GRAS Transcription Factor family AT4G17230 60.92 1.94e-30 112.0
Soca5g02259 . 118 489 GRAS Transcription Factor family AT5G48150 63.71 1.44e-175 502.0
Soca5g01924 . 73 717 GRAS Transcription Factor family AT2G37650 52.608 0.0 661.0
Soca9g01382 . 150 507 GRAS Transcription Factor family AT1G66350 29.551 1.05e-55 193.0
Soca6g03022 . 238 417 GRAS Transcription Factor family AT3G50650 52.222 1.51e-49 169.0
Soca7g01361 . 346 486 GRAS Transcription Factor family AT3G03450 34.507 2.49e-22 90.1
Soca7g00368 . 144 507 GRAS Transcription Factor family AT1G66350 43.915 7.38e-99 311.0
Soca8g04739 . 86 767 GRAS Transcription Factor family AT1G07530 48.575 0.0 621.0
Soca8g05149 . 47 713 GRAS Transcription Factor family AT2G37650 51.441 0.0 644.0
Soca8g03974 . 276 650 GRAS Transcription Factor family AT3G54220 55.556 1.14e-144 427.0
Soca8g03592 . 247 651 GRAS Transcription Factor family AT3G54220 81.907 0.0 660.0
Soca7g03517 ACH 37 484 GRAS Transcription Factor family AT4G36710 46.526 7.49e-125 372.0
Soca6g00139 . 135 444 GRAS Transcription Factor family AT1G55580 26.994 4.65e-18 84.7
Soca6g00138 . 152 515 GRAS Transcription Factor family AT5G17490 24.202 1.70e-20 92.4
Soca6g00137 . 217 510 GRAS Transcription Factor family AT3G13840 23.397 6.61e-13 68.9
Soca6g00140 . 216 581 GRAS Transcription Factor family AT2G01570 25.587 2.39e-19 88.6
Soca6g00309 . 271 510 GRAS Transcription Factor family AT3G13840 54.582 2.28e-90 275.0
Soca5g05518 . 86 767 GRAS Transcription Factor family AT1G07530 45.649 0.0 556.0
Soca5g05521 . 223 767 GRAS Transcription Factor family AT1G07530 52.613 0.0 569.0
Soca5g05271 . 40 444 GRAS Transcription Factor family AT1G55580 46.523 1.11e-111 333.0
Soca5g05361 . 162 545 GRAS Transcription Factor family AT3G03450 33.496 1.29e-62 213.0
Soca4g00876 . 1 583 GRAS Transcription Factor family AT5G66770 50.831 2.96e-178 514.0
Soca4g03089 . 67 490 GRAS Transcription Factor family AT5G48150 68.852 0.0 605.0
Soca4g02929 . 161 529 GRAS Transcription Factor family AT1G14920 35.623 1.95e-73 241.0
Soca5g00519 ACH 84 555 GRAS Transcription Factor family AT4G00150 48.319 1.53e-158 467.0
Soca7g01491 . 32 401 GRAS Transcription Factor family AT5G41920 34.684 3.08e-53 183.0
Soca2g04635 . 40 444 GRAS Transcription Factor family AT1G55580 49.758 1.42e-125 370.0
Soca9g00946 . 27 529 GRAS Transcription Factor family AT1G14920 48.343 3.65e-161 467.0
Soca2g03084 . 30 78 GRAS Transcription Factor family AT5G17490 63.265 1.94e-11 57.8
Soca7g03079 . 24 478 GRAS Transcription Factor family AT1G50420 37.473 1.32e-108 327.0
Soca3g02169 ACH 27 486 GRAS Transcription Factor family AT4G36710 47.357 7.47e-134 395.0
Soca5g02831 . 41 490 GRAS Transcription Factor family AT5G48150 61.488 0.0 571.0
Soca4g00726 . 1 529 GRAS Transcription Factor family AT4G37650 56.239 0.0 542.0
Soca4g00709 . 12 409 GRAS Transcription Factor family AT3G49950 61.501 0.0 520.0
Soca1g01722 . 1 656 GRAS Transcription Factor family AT1G63100 49.56 0.0 569.0
Soca3g02824 . 45 545 GRAS Transcription Factor family AT3G03450 63.208 0.0 660.0
Soca9g01868 . 30 405 GRAS Transcription Factor family AT5G41920 67.885 0.0 514.0
Soca9g00400 ACH 2 510 GRAS Transcription Factor family AT3G13840 46.679 2.42e-149 436.0
Soca1g01401 . 205 555 GRAS Transcription Factor family AT4G00150 47.645 1.58e-103 324.0
Soca1g01566 . 1 656 GRAS Transcription Factor family AT1G63100 50.0 0.0 573.0
Soca1g01316 . 211 583 GRAS Transcription Factor family AT2G01570 28.244 2.16e-57 197.0
Soca1g01313 . 98 547 GRAS Transcription Factor family AT3G03450 29.399 1.38e-57 199.0
Soca1g01314 . 98 547 GRAS Transcription Factor family AT3G03450 29.399 1.38e-57 199.0
Soca1g01315 . 178 307 GRAS Transcription Factor family AT3G03450 27.206 1.20e-11 62.8
Soca3g04731 . 4 482 GRAS Transcription Factor family AT1G50420 61.649 0.0 594.0
Soca5g05603 . 157 597 GRAS Transcription Factor family AT1G50600 61.435 0.0 553.0
Soca6g01688 . 310 767 GRAS Transcription Factor family AT1G07530 51.31 4.40e-166 491.0
Soca6g01685 . 20 766 GRAS Transcription Factor family AT1G07530 45.609 0.0 605.0
Soca6g01686 . 300 686 GRAS Transcription Factor family AT1G07530 44.67 2.53e-102 322.0
Soca6g01687 . 380 768 GRAS Transcription Factor family AT1G07530 51.01 3.46e-147 438.0
Soca6g01684 . 20 766 GRAS Transcription Factor family AT1G07530 45.703 0.0 605.0
Soca3g01993 . 178 547 GRAS Transcription Factor family AT3G03450 26.913 7.76e-49 175.0
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Soca GRAS 3.5e-97 CL0063 TF GRAS